Pairwise Alignments

Query, 343 a.a., iron ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., iron-compound ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  179 bits (454), Expect = 1e-49
 Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 27/305 (8%)

Query: 56  VIHDIRLPRTLLCLLVGAILALCGTAMQGLFRNPLAEPGIIGVSSGASLGAALAIVLLS- 114
           ++ ++RLPR LL  + GA L+L G+ +Q + RNPLA+P + G+SSGAS GA + + L S 
Sbjct: 79  IVMELRLPRILLAFVAGAGLSLAGSVLQTVTRNPLADPYLFGISSGASFGAVVMLTLFSG 138

Query: 115 -------------------DVVSSLPWVNSLVLPIAAFIGGALTTVLVYRLGTSKFGTSV 155
                              ++++ L W +   LP  AFIG +L+ ++V  L      + V
Sbjct: 139 SGFFANAGVIANSGIFSGAEILAGLQWFS---LPFGAFIGASLSVLIVLALSGLGLNSQV 195

Query: 156 TIMLLAGVAISALAGAGIGYLNYLASDQMLRDLTLWSMGSVAGATTSSILLCS-VTLIML 214
             MLL+GVA S + GA    L Y AS Q    +  WS+GS A A+ S ++L + V L+  
Sbjct: 196 ERMLLSGVATSFMFGALTSLLLYFASPQATASVLFWSLGSFAKASWSLLILPTIVVLVSF 255

Query: 215 FAYFHWRSMALNALLLGEAEARHLGVPVQKLKREMILLSAVGVGVAVSAAGMIGFVGLVV 274
           F    W+   + AL  G+  A  LGV V KL+  M+LL ++   + V+  G IGFVGL++
Sbjct: 256 FIILGWKRQIM-ALQAGDETAHTLGVNVPKLRLNMLLLCSLITAILVATCGGIGFVGLMI 314

Query: 275 PHIGRMLVGPDHRNLVPVSTLLGALMLTLADMVARVAVAPAELPIGIVTALVGAPFFLYL 334
           PH  R+L     R  + ++ L+G L +   D++AR  +   ELP+GI+TA +G+ FFL +
Sbjct: 315 PHTVRLLF--PGRQPILLTALVGGLFMVWIDVLARCLLGNQELPVGIITASIGSFFFLLI 372

Query: 335 LFQQK 339
           L ++K
Sbjct: 373 LRRRK 377