Pairwise Alignments

Query, 343 a.a., iron ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., Vitamin B12 transporter, permease component (fecCD-like) (from data) from Shewanella sp. ANA-3

 Score =  176 bits (446), Expect = 9e-49
 Identities = 119/340 (35%), Positives = 182/340 (53%), Gaps = 35/340 (10%)

Query: 29  GPMNITISDSIQ------SLLFRSEQL--TNAIHLVIHDIRLPRTLLCLLVGAILALCGT 80
           G  NI+  D +Q      S LF +++   T+    ++ ++RLPR +L  + GA L+L G+
Sbjct: 45  GAANISFLDVLQVFINKLSHLFMADEAVSTSMTERIVMELRLPRIILAFVAGAGLSLAGS 104

Query: 81  AMQGLFRNPLAEPGIIGVSSGASLGAALAIVLL--------------------SDVVSSL 120
            +Q + RNPLA+P + G+SSGAS GA + + L                     S   + L
Sbjct: 105 VLQTVTRNPLADPYLFGISSGASFGAVVMLTLFTGSGLFGNAGTIANSGIFSGSGTFAGL 164

Query: 121 PWVNSLVLPIAAFIGGALTTVLVYRLGTSKFGTSVTIMLLAGVAISALAGAGIGYLNYLA 180
            W +   LP  AFIG +L+ ++V  L      + V  MLL+GVA S +  A    L Y A
Sbjct: 165 LWFS---LPFGAFIGASLSVLIVLALAGLGLKSQVERMLLSGVATSFMFSALTSLLLYFA 221

Query: 181 SDQMLRDLTLWSMGSVAGATTSSILLCS-VTLIMLFAYFHWRSMALNALLLGEAEARHLG 239
           S Q    +  WS+GS A A+ S ++L S V L+  F    W+   + AL  G+  A  LG
Sbjct: 222 SPQATASVLFWSLGSFAKASWSLLVLPSLVVLLSFFIILGWKRQIM-ALQAGDETAHTLG 280

Query: 240 VPVQKLKREMILLSAVGVGVAVSAAGMIGFVGLVVPHIGRMLVGPDHRNLVPVSTLLGAL 299
           V V KL+  M+LL ++   + V+  G IGFVGL++PH  R+L     R  + ++ L+G L
Sbjct: 281 VNVPKLRLNMLLLCSLITAILVATCGGIGFVGLMIPHTVRLLF--PGRQPILLTALVGGL 338

Query: 300 MLTLADMVARVAVAPAELPIGIVTALVGAPFFLYLLFQQK 339
            +   D++AR  +   ELP+GI+TA +G+ FFL +L ++K
Sbjct: 339 FMVWIDVLARCLLGNQELPVGIITAAIGSFFFLLILRRRK 378