Pairwise Alignments

Query, 228 a.a., biopolymer transporter exbB1 from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., MotA/TolQ/ExbB proton channel (RefSeq) from Shewanella sp. ANA-3

 Score =  168 bits (425), Expect = 1e-46
 Identities = 92/212 (43%), Positives = 128/212 (60%), Gaps = 5/212 (2%)

Query: 1   MESLQQLQQQLGLMAWPLFICSALTVMLLAER----LFQVLLSLTVGKGAIRHALQATSP 56
           M     LQ QLG + WPL IC+ L +M+  ER    L Q   S++  K A   AL+ +  
Sbjct: 1   MTDFSTLQAQLGALTWPLLICAFLALMICLERSALFLQQSFASISPKKQAWVKALRQSDA 60

Query: 57  KNPKQLAE-LTEHFASKRPVLYRGVAMLLAHHQFDKSLREDAAGIWLQEQRHQFNSGLRL 115
           K   +  + L +  + ++ +L RG  +LL      K LRE+   +WL +Q+    +GL+L
Sbjct: 61  KASSETVQALIDSTSRQQDLLTRGANLLLKQADKPKPLREELLSLWLNKQQRDLQAGLKL 120

Query: 116 LTLIGVISPLLGLLGTVLGLIEMFKGVAATTGSITPNVLADGLGVAMYTTAAGLLIAVPA 175
           L +IG+ISPLLGLLGTVLGLIEMF  +  + G +TP+ L+ GLG+AM TTAAGL+IAVP 
Sbjct: 121 LQVIGIISPLLGLLGTVLGLIEMFAQLGQSQGPVTPSQLSAGLGLAMNTTAAGLIIAVPT 180

Query: 176 VAGAQLLSLWADRTMAKLEHTLNYVNLWLEGM 207
           +  A L  +WA     K+ H LN +NLWL G+
Sbjct: 181 ITAAHLFGIWAHSQCVKVSHVLNQLNLWLSGV 212