Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  191 bits (484), Expect = 8e-53
 Identities = 122/347 (35%), Positives = 194/347 (55%), Gaps = 5/347 (1%)

Query: 232 LVVVAIIAIIGYVVV----NRKIVTPIDRMASVLQRADDNSDLTLRVEEKSDDELAVIGR 287
           +++V+I A +  VV+     R IV P++R A    R   + +L   + +   DE   + +
Sbjct: 192 IIIVSISAALATVVLALLLTRSIVAPLNR-ALEAARTIASGNLVQVIADDGKDEPGRLLQ 250

Query: 288 TINKVLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTS 347
            +  +  S   TI +I      + + +  + ++T ++ +   QQ  E+E AATA+ EMT+
Sbjct: 251 ALATMQVSLRQTIEQIAGSATQLGAAAQELSAVTQESSRGLQQQHNEIEQAATAVNEMTA 310

Query: 348 ALSSVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNN 407
           A+  V+++     E +  + + A   +    +T+     +  + Q T+ +I+ LA +  +
Sbjct: 311 AVEEVARNAVSTSEASNQSTQAAQEGRTRVVETVDAIQTMTHDVQATASMIEGLAVQGRD 370

Query: 408 VGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETM 467
           +G VLDVI+AIAEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RT +ST EIE M
Sbjct: 371 IGKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQSTQEIEKM 430

Query: 468 ISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQ 527
           ++ +Q     + ++++ S  + QST      A  +L  I  S  +I++ N  IA+A+EEQ
Sbjct: 431 VAGIQNGTGQAVQSMQQSNQRTQSTLEMARAAGVALEQITQSIHQINERNLVIASASEEQ 490

Query: 528 LTVSDEISSNLSTIKTLSGEMNLAIKQLGPVVVDLQRNVDDLNSAIA 574
             VS E+  NL  I+ L+ +     KQ      +L R    LN+ +A
Sbjct: 491 AQVSREVDRNLVNIRDLATQSASGAKQTSDATHELSRLAVGLNAMVA 537



 Score = 28.5 bits (62), Expect = 7e-04
 Identities = 72/379 (18%), Positives = 128/379 (33%), Gaps = 91/379 (24%)

Query: 233 VVVAIIAIIGYVVVNRKIVT-------------PIDRMASVLQRADDNSDLTLRVEEKSD 279
           V+  ++ I+G    NR  V               +  +A+VL+       L+ R+    D
Sbjct: 18  VIALLVVILGVFAANRMSVIRQASLEMEQTQVPSVGYLANVLENVLRMRILSFRILVNRD 77

Query: 280 DELAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMAA 339
                   ++ +     G  + K+N+ N + +++  T      Q  ++       LE   
Sbjct: 78  PA------SLTEAESRIGVLVEKLNKANSSYAALPST-----PQEAELYKVFSATLEKYL 126

Query: 340 TAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGE-FQKTSEII 398
            A +EM                   S + +A+  +      I+E  DL GE   K   I 
Sbjct: 127 QAQKEMLDL----------------SRQNKADELRTHINTRIKEGTDLMGEQLNKLIAIN 170

Query: 399 QQLATESNN---------VGNVLDVIKAIAEQTNLLAL----------NAAIEAARAGEQ 439
              A+ES+          +  ++ V  + A  T +LAL          N A+EAAR    
Sbjct: 171 VAGASESSAKAGEHYDSAITGIIIVSISAALATVVLALLLTRSIVAPLNRALEAARTIAS 230

Query: 440 GRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVA 499
           G    V+AD+ +    R             +LQ  A M                      
Sbjct: 231 GNLVQVIADDGKDEPGR-------------LLQALATMQVSL------------------ 259

Query: 500 NESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAIKQLGPVV 559
            +++  I GSA ++      ++A T+E      +  + +    T   EM  A++++    
Sbjct: 260 RQTIEQIAGSATQLGAAAQELSAVTQESSRGLQQQHNEIEQAATAVNEMTAAVEEVARNA 319

Query: 560 VDLQRNVDDLNSAIAHIRT 578
           V      +    A    RT
Sbjct: 320 VSTSEASNQSTQAAQEGRT 338