Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Chemotactic transducer from Pseudomonas fluorescens FW300-N2E2

 Score =  191 bits (485), Expect = 8e-53
 Identities = 117/330 (35%), Positives = 197/330 (59%), Gaps = 10/330 (3%)

Query: 220 QVKSTVLIGNISLVVVAIIAIIGYVVVNRKIVTPIDRMASVLQR-ADDNSDLTLRVEEKS 278
           Q +++ LI     V VA IA++  +++ + ++ P+  M   +Q  A    DLT R+  + 
Sbjct: 270 QFRTSALIA--MFVAVAAIALLLSLLI-QVLMRPLTTMGRAMQDIAQGEGDLTRRLVVQG 326

Query: 279 DDELAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMA 338
            DE AV+G + N+ +    ++IS+++     +  +S  + + ++ ++  S +Q       
Sbjct: 327 KDEFAVLGGSFNQFVERIHASISEVSSATRQVHDLSQRVMTSSNASLVGSDEQSARTNSV 386

Query: 339 ATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEII 398
           A A+ ++ +A   ++++   A ++A  A ++A++ +QV EKTI+   +L  +   +   I
Sbjct: 387 AAAINQLGAATQEIARNAADASQHASGASEQADDGRQVVEKTIQAMTELSQKISLSCTQI 446

Query: 399 QQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQ 458
           + L   ++N+G++LDVIK I++QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ
Sbjct: 447 ETLNASTDNIGHILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQ 506

Query: 459 ESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANES---LVAIQGSAKEIHK 515
           ES  EI  MI+ LQ  +  +  T+  S     S+  ++ VAN++   LV++     EI  
Sbjct: 507 ESAEEIHKMITSLQVGSREAVTTMNAS---QTSSEESVEVANQAGLRLVSVTQRIGEIDG 563

Query: 516 LNTSIAAATEEQLTVSDEISSNLSTIKTLS 545
           +N S+AAATEEQ  V + ++ ++S I  L+
Sbjct: 564 MNQSVAAATEEQTAVVETLNMDVSHINLLN 593



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 502 SLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAIKQLGPVVVD 561
           S+  +  + +++H L+  +  ++   L  SDE S+  +++         AI QLG    +
Sbjct: 347 SISEVSSATRQVHDLSQRVMTSSNASLVGSDEQSARTNSVAA-------AINQLGAATQE 399

Query: 562 LQRNVDD 568
           + RN  D
Sbjct: 400 IARNAAD 406