Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  194 bits (493), Expect = 1e-53
 Identities = 115/345 (33%), Positives = 192/345 (55%), Gaps = 1/345 (0%)

Query: 233 VVVAIIAIIGYVVVNRKIVTPIDRMASVLQRADDNSDLTLRVEEKSDDELAVIGRTINKV 292
           V++ ++ +  +  + R +   ID +  V +R  +  DL+ RV   S DE+A I   +N +
Sbjct: 330 VIMGLLLLYAFCSIYRALRLTIDSLLGVTRRLGEG-DLSARVAVVSKDEVADIANGLNLM 388

Query: 293 LGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALSSV 352
             ++ S+IS +++ ++ ++ ++  + +      +  + Q  E E  ATA+ EMT++++ V
Sbjct: 389 ADAFASSISHMDRTSYELTDVASRLGASIGLAKQSMNAQQAETEQVATAINEMTASVADV 448

Query: 353 SQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGNVL 412
           +Q+T  A   A  A   + N  ++  +       L  E + +++ +Q LA  S ++G V+
Sbjct: 449 AQNTEGAALAADEANTASRNGLRIMHQAHSTIQALAEEVELSAQKVQALALHSQSIGGVI 508

Query: 413 DVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISMLQ 472
            VI  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ ST EI  +I  LQ
Sbjct: 509 QVISTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTEEIRGIIQQLQ 568

Query: 473 EKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSD 532
              + + + ++    K  +       A+ SL +I    + I ++NT IA+A  +Q  VS+
Sbjct: 569 SATDAAVQQMQAGQQKAHACISAASDASGSLSSISQGVERIVEMNTQIASAAVQQHAVSE 628

Query: 533 EISSNLSTIKTLSGEMNLAIKQLGPVVVDLQRNVDDLNSAIAHIR 577
           +I+ N+  I+  SG + L I        +L R   D+ + +A  +
Sbjct: 629 DINRNVMEIRNSSGTLMLGIDNNAVTADELARVASDMRNVVARFK 673