Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  197 bits (501), Expect = 1e-54
 Identities = 122/346 (35%), Positives = 197/346 (56%), Gaps = 1/346 (0%)

Query: 232 LVVVAIIAIIGYVVVNRKIVTPIDRMASVLQRADDNSDLTLRVEEKSDDELAVIGRTINK 291
           +V+V ++ I+  V++ R+I  P+    ++++R   + DLT        DEL V+ + I +
Sbjct: 295 VVLVMLLGILAAVIITRQITRPLRDTLAIVERIA-SGDLTHTEAVTRRDELGVLQQGIQR 353

Query: 292 VLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALSS 351
           +  +    IS I      I+S ++ + ++T+Q     + Q  E +  ATAM EM++ +  
Sbjct: 354 MGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSATVHE 413

Query: 352 VSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGNV 411
           V+++   A   A  A+++A +  +V  + I++   L  E  ++S+ +  L  +S+ +G V
Sbjct: 414 VARNAEQASVAASDADQQARDGDKVVGEAIQQIERLAAEVVRSSDAMNVLEQDSDKIGKV 473

Query: 412 LDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISML 471
           +DVIKA+AEQTNLLALNAAIEAARAGE GRGFAVVADEVR LAQRTQ+ST EIE +++ L
Sbjct: 474 MDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTEEIEGLVAAL 533

Query: 472 QEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTVS 531
           Q      +  +  S     S+      A  SL +I  +   I  +N  IAAA E+Q +V+
Sbjct: 534 QNGTRQVSGIMLGSRTLTDSSVELTRRAGTSLESITRTVSSIQAMNQQIAAAAEQQSSVA 593

Query: 532 DEISSNLSTIKTLSGEMNLAIKQLGPVVVDLQRNVDDLNSAIAHIR 577
           DEIS ++  ++ +S +   A ++     V+L R    L   ++H R
Sbjct: 594 DEISRSIVNVRDVSEQTAEASEETAASSVELARLGGQLQMMVSHFR 639