Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  189 bits (481), Expect = 2e-52
 Identities = 116/325 (35%), Positives = 186/325 (57%), Gaps = 2/325 (0%)

Query: 218 AEQVKSTVLIGNISLVVVAIIAIIGYVVVNRKIVTPIDRMASVLQR-ADDNSDLTLRVEE 276
           A   + T LIG I+ V+  + AI+G     R IV PI  ++S L+  A    DLT  +  
Sbjct: 286 ASATRLTWLIGIIAAVLAVVFAIVGASFA-RVIVRPIHSVSSGLEGIAGGEGDLTQNLAV 344

Query: 277 KSDDELAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELE 336
           +  DE A +    NK L +  S I  I Q    I   S +   +++   + + +Q + ++
Sbjct: 345 RGKDETAQLAGWFNKFLTAIRSLIQHIGQAAGKILEASHSSTRVSNDMAEAAGRQREAVD 404

Query: 337 MAATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSE 396
           M +TA  EM +  + V++S + A + A + +++A   ++  +  +R    L  E  ++++
Sbjct: 405 MVSTAFHEMVATSNEVARSCSQAADSADNGQQQAREGQRQIDDAVRSVDQLSEELTRSAK 464

Query: 397 IIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQR 456
            + QL  +S  + ++L+ I++IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA+R
Sbjct: 465 DMTQLEKDSAGIQSILNTIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAKR 524

Query: 457 TQESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKL 516
           T +ST EI++++  L ++     + +  S D  Q +   +G A  S   I+ S   I  +
Sbjct: 525 TSDSTAEIDSLLGNLAKRTASVAQQMHASLDVSQQSVTKIGQARSSFGQIRESVDVIRDM 584

Query: 517 NTSIAAATEEQLTVSDEISSNLSTI 541
           NT IA A EEQ  V+++I+ ++S I
Sbjct: 585 NTQIATAAEEQHQVAEDINRHISQI 609