Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  212 bits (540), Expect = 3e-59
 Identities = 128/367 (34%), Positives = 205/367 (55%), Gaps = 7/367 (1%)

Query: 215 NQAAEQVKSTVLIGNISLVVVAIIAIIGYVVVNRKIVTP----IDRMASVLQRADDNSDL 270
           +  A + K+ +    + +  + +I ++  V + R IV P    +  MAS+   A   SDL
Sbjct: 179 DDVAAEFKTQLWNAGMFIAGIVLIMVLLLVTIVRSIVRPLRAAVGAMASI---ASGESDL 235

Query: 271 TLRVEEKSDDELAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQ 330
           T  +E   +DE+  +G   N  +    + + ++      +   S  + S  +Q    S Q
Sbjct: 236 TRTLETHGNDEITELGTHFNAFVAKLRNVVGQLQHSAVALGQASTDLGSDAEQAQSRSEQ 295

Query: 331 QDQELEMAATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGE 390
           Q Q++++ ATA+ E+T  +  V+++   A      AE +A   +   + ++R+   L   
Sbjct: 296 QSQQMDLVATAVNEVTYGVQDVAKNAEHAASEMRDAESQAQQGQINIDNSLRQIEHLSST 355

Query: 391 FQKTSEIIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 450
             +  +++Q LA+ES  +G+VL+VI +IAEQTNLLALNAAIEAARAGEQGRGFAVVADEV
Sbjct: 356 IGQAVQVMQSLASESTQIGSVLEVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 415

Query: 451 RSLAQRTQESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSA 510
           R LAQRTQ+ST EI++MI  LQ+ ++ + K I  S+   Q T      A +SL +I  + 
Sbjct: 416 RLLAQRTQKSTAEIQSMIERLQKHSDAAVKVIGDSSRSSQLTIEQANQAGQSLTSISQAL 475

Query: 511 KEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAIKQLGPVVVDLQRNVDDLN 570
           + ++ LN SIA+AT +Q  V D+I+ N++    LS    LA +Q     + L+   ++LN
Sbjct: 476 RNLNSLNASIASATLQQTHVVDDINQNVTQAAQLSQSTALAAEQSTSASLHLRGLSEELN 535

Query: 571 SAIAHIR 577
           + +   R
Sbjct: 536 TLLKQFR 542