Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  203 bits (516), Expect = 2e-56
 Identities = 129/378 (34%), Positives = 207/378 (54%), Gaps = 9/378 (2%)

Query: 200 DRFFQELETRTAQQFNQAAEQVKSTVLIGNISLVVVAIIAIIGYVVVNRKIVTPIDRMAS 259
           D +  +L+ R  +       Q+  T+L          I+ II  V++ R+I  P+    +
Sbjct: 271 DMYKLQLDRRDQESAQARTTQITCTLL--------AIILGIIAAVIITRQITRPLRETLA 322

Query: 260 VLQRADDNSDLTLRVEEKSDDELAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIRS 319
           V+ R   + DLT  +     DEL V+ + I ++  +    I  I      I+S ++ + +
Sbjct: 323 VVDRIA-SGDLTQTLAVTRSDELGVLQQGIQRMGTTLRELIGGIRDSVVQIASAAEELSA 381

Query: 320 ITDQNMKMSSQQDQELEMAATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFEK 379
           +T+Q     + Q  E +  ATAM EM++ ++ V+++   A + A +A++EA +  +V  +
Sbjct: 382 VTEQTSAGVNSQKVETDQVATAMHEMSATVAEVARNAEQASQAASNADREARDGDKVVGE 441

Query: 380 TIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQ 439
            I +   L  E  ++ + + +L  ES+ +G V+DVIKA+AEQTNLLALNAAIEAARAGE 
Sbjct: 442 AIAQIERLANEVGRSVDAMTELEQESDKIGKVMDVIKAVAEQTNLLALNAAIEAARAGEA 501

Query: 440 GRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVA 499
           GRGFAVVADEVR LAQRTQ+ST EIET+++ LQ      +  +  S +   S+      A
Sbjct: 502 GRGFAVVADEVRGLAQRTQQSTVEIETLVAALQSGTRQVSSIMLNSRELTVSSVTLSRQA 561

Query: 500 NESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAIKQLGPVV 559
             SL +I  +   I  +N  IAAA EEQ  V++EIS ++  ++ +S +   A ++     
Sbjct: 562 GTSLGSITQTVSSIQAMNQQIAAAAEEQSAVAEEISRSIVNVRDVSEQTASASEETAASS 621

Query: 560 VDLQRNVDDLNSAIAHIR 577
           V+L R    L + ++  R
Sbjct: 622 VELARLGGQLQTMVSRFR 639



 Score = 25.8 bits (55), Expect = 0.006
 Identities = 46/258 (17%), Positives = 101/258 (39%), Gaps = 25/258 (9%)

Query: 282 LAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIRS--ITDQNMKMSSQQDQELEMAA 339
           LA+ G T    L +  + +S I  +N  ++ +  T     + D + K++      L+   
Sbjct: 28  LALTGWTSMSGLINRSNWMSDITSLNAQLTKLRVTRLQYMVADGDEKVAETVQTSLDSFK 87

Query: 340 TAMEEMTSALSSVSQSTNMAEEYA---GSAEKEANNSKQVFEKTIREFADLDGEFQKTSE 396
              E++ ++  S  ++  M ++        +K  NN +  ++ +     +L     K+  
Sbjct: 88  AYQEKLRASFKS-PENLKMLDQLGIVIADYQKSLNNMRSGYKASTAARDELTTHAVKSLA 146

Query: 397 IIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQR 456
           + +QL TE  N    +D   A   +   L  +A  +   A  + RG+   A         
Sbjct: 147 VFEQLVTEVRN----MDPADANRFEQYRLVTDAKDDLRLARYEVRGYTTNA------TPE 196

Query: 457 TQESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKL 516
           T+++   +  + S +++   + T      AD+++           SL+A + + +     
Sbjct: 197 TEQAA--VSKLDSAIKDLDALKTTFSGTQADQLRQ-------LETSLMAYRTTLQNFKAA 247

Query: 517 NTSIAAATEEQLTVSDEI 534
             +I  A +E  T   +I
Sbjct: 248 TGTIVQARKEMTTQGQDI 265