Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  193 bits (490), Expect = 2e-53
 Identities = 116/339 (34%), Positives = 188/339 (55%), Gaps = 1/339 (0%)

Query: 239 AIIGYVVVNRKIVTPIDRMASVLQRADDNSDLTLRVEEKSDDELAVIGRTINKVLGSYGS 298
           A +  + ++R I TPI+   +  +R   + DLTL +  +  DE  ++   ++ +  +  S
Sbjct: 208 AFVMGLFISRAISTPINTAVTNARRIA-SGDLTLPIASQYHDEAGMMLVALSDMQDNLKS 266

Query: 299 TISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALSSVSQSTNM 358
           TI +I+     ++S ++ + ++T+++ +   +Q+ E++ AA+A+ EMT+A+  V+++   
Sbjct: 267 TIGQISSAADQLASAAEELNAVTEESSRGLIRQNDEIQQAASAVNEMTAAVEEVARNAMS 326

Query: 359 AEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKAI 418
             E +     +A   +      +     +  E   ++ ++++LA     +G VLDVI+ I
Sbjct: 327 TSEASRQTSTDAAAGRDQARDAVNAINTVSAEISSSTTMVEELAGRVREIGQVLDVIRGI 386

Query: 419 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEMS 478
           AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ STGEIETMI  +Q  A+ +
Sbjct: 387 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTGEIETMIGSVQASADQA 446

Query: 479 TKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNL 538
            + +  S     +T+       +SL  I  S  EI+  N  IA A+EEQ  V+ E+  NL
Sbjct: 447 VRAMANSRTLTSNTQTLAQATGQSLERIAQSVAEINDRNMLIATASEEQSHVAREVDRNL 506

Query: 539 STIKTLSGEMNLAIKQLGPVVVDLQRNVDDLNSAIAHIR 577
             I+ LS +      Q      +L R     N+ +   +
Sbjct: 507 VNIQDLSAQTAAGAHQTSASSQELSRLAISFNNLVGKFK 545