Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  215 bits (547), Expect = 5e-60
 Identities = 129/380 (33%), Positives = 217/380 (57%), Gaps = 7/380 (1%)

Query: 201 RFFQELETRTAQQFNQAAEQVKSTVLIGNISLVVVAIIAIIGYVVVNRKIVTPIDRMASV 260
           R  +++ET T    NQA   + S     ++  +++ +IAI+  VV++  +V P+ R    
Sbjct: 297 RLAKDIETVTNDISNQALNDINSA----SLRTLILVVIAIVVAVVISFAVVRPLKRSLDE 352

Query: 261 LQRADD---NSDLTLRVEEKSDDELAVIGRTINKVLGSYGSTISKINQVNHTISSISDTI 317
           +  A +   + DLT ++++   DE A + R  N+++ S  S I+ I   ++ +++ ++  
Sbjct: 353 VNGALNVLASGDLTHKLDDTGHDEFAELSRNCNRLVDSLRSLIASILDRSNQLAAAAEET 412

Query: 318 RSITDQNMKMSSQQDQELEMAATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVF 377
            +IT Q      +Q  +++  ATA  E++S+   V+ S + A      A++E  + + + 
Sbjct: 413 SAITSQTTIGIQEQKSQVDQVATATTELSSSAHQVNMSADDALSQIKQADEETQHMRTIA 472

Query: 378 EKTIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAG 437
           ++  R    L  E  K S++I ++ ++S ++G++LDVI+ IAEQTNLLALNAAIEAARAG
Sbjct: 473 DENKRTILSLADEVAKASKVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAG 532

Query: 438 EQGRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMG 497
           EQGRGFAVVADEVRSLA RTQ+ST EI+ MI +LQ+  + +   +++  ++ QS      
Sbjct: 533 EQGRGFAVVADEVRSLASRTQDSTREIQQMIEVLQQGTQQAVAVMQLGQNQAQSCVEKTE 592

Query: 498 VANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAIKQLGP 557
            AN++L  I  S  + +   T IA A +EQ  VS ++S  L  I  +S E  L  +Q   
Sbjct: 593 QANQALQTISHSVHKAYDAGTHIAQAAQEQNLVSQQVSEKLEHIAAISEETALGAEQTAK 652

Query: 558 VVVDLQRNVDDLNSAIAHIR 577
              ++ R  ++L S++   R
Sbjct: 653 SSHEVARLAEELQSSVKEFR 672