Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  201 bits (511), Expect = 6e-56
 Identities = 124/344 (36%), Positives = 196/344 (56%), Gaps = 5/344 (1%)

Query: 233 VVVAIIAIIGYVVVNRKIVTPI-DRMASVLQRADDNSDLTLRVEEKSDDELAVIGRTINK 291
           V + +I I+G  V++R I  P+ D +A+    A    DLTLR+EE   DEL  +  + N+
Sbjct: 204 VWLPVILILG--VISRSISAPMADTIAAFENIARGEGDLTLRLEESGRDELKQVAASFNE 261

Query: 292 VLGSYGSTISKIN-QVNHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALS 350
            +    + ++ ++  V H+   +++ +  I+ Q   +++    E +  ATA+ EM+ A S
Sbjct: 262 FVAKIQALVNSVSASVTHS-RELAEGLADISAQASMVTANMQAETQSVATAINEMSMASS 320

Query: 351 SVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGN 410
            V+ +  +A + AGSA+ EA+++  V +  + +   L  E + T++  Q L   S  +G 
Sbjct: 321 EVASNAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTADEAQALQISSGKIGQ 380

Query: 411 VLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISM 470
           +LDVI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQEST EI  +I  
Sbjct: 381 ILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQESTQEINAIIEA 440

Query: 471 LQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTV 530
           ++   +    ++  +  + + T G      E+L  I+ S ++I  +N  IA ATEEQ  V
Sbjct: 441 IRASVDSVNASVARAKAQSEQTVGETSQVVEALQTIKSSIRQISDMNIQIATATEEQSAV 500

Query: 531 SDEISSNLSTIKTLSGEMNLAIKQLGPVVVDLQRNVDDLNSAIA 574
             E++ N++ I  +S E     +++G     ++    DL S I+
Sbjct: 501 IAELNMNVTRINDISLENQQKSEEIGSTSEQIKSGSADLESLIS 544



 Score = 40.4 bits (93), Expect = 2e-07
 Identities = 36/199 (18%), Positives = 87/199 (43%), Gaps = 21/199 (10%)

Query: 393 KTSEIIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRS 452
           K   ++  ++    +   + + +  I+ Q +++  N   E           ++ + EV S
Sbjct: 265 KIQALVNSVSASVTHSRELAEGLADISAQASMVTANMQAETQSVATAINEMSMASSEVAS 324

Query: 453 LAQRTQESTGEIE-------TMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVA 505
            AQ   +S G  +        ++     K +  +  + V+AD+ Q+ + + G   + L  
Sbjct: 325 NAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTADEAQALQISSGKIGQILDV 384

Query: 506 IQGSAKEIH--KLNTSIAAATEEQL-----TVSDEISSNLSTIKTLSGEMNLAIKQLGPV 558
           I G A++ +   LN +I AA   +       V+DE+       +TL+     + +++  +
Sbjct: 385 IVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEV-------RTLASRTQESTQEINAI 437

Query: 559 VVDLQRNVDDLNSAIAHIR 577
           +  ++ +VD +N+++A  +
Sbjct: 438 IEAIRASVDSVNASVARAK 456