Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 572 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  212 bits (539), Expect = 4e-59
 Identities = 133/411 (32%), Positives = 225/411 (54%), Gaps = 10/411 (2%)

Query: 177 NMAVQLLHSEEYHREKAKIMAPIDRFFQELETRTAQQFNQAAEQVKSTVLIGN--ISLVV 234
           N A+Q L   EY R    ++  I+  F+++  +     +    + K++       +SL +
Sbjct: 161 NPAIQALSQGEYKRSNQLLLEKINPLFKDITDQAQAFLDMQIAEAKTSYQASQETVSLYI 220

Query: 235 --VAIIAIIGYVVVNRKIVTPIDRMASVLQRADDNS------DLTLRVEEKSDDELAVIG 286
             VAI + +  + ++   V  I R++  + + ++ +      DLT R+     DE A I 
Sbjct: 221 WLVAIFSGVAMLAISVSSVFIIRRVSLSVVQLEETAVDIAAGDLTKRIRLGGHDEFAHIA 280

Query: 287 RTINKVLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMT 346
             +N++   +   ++  +     ++S ++    ++ Q  +    Q Q+ ++ ATA+ E T
Sbjct: 281 EHVNRIASDFQQAVTNTHASTSRLASAAEENAVVSTQTQRNVLDQQQQTQLIATAIHEFT 340

Query: 347 SALSSVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESN 406
           + +  V+QS   A   +  A   A+ ++ V +++I     L  E  + SE +  LA  SN
Sbjct: 341 ATVREVAQSAASAATASQDANGAAHGAQGVVDESIAVIEALAQELSRASEAMTLLAQHSN 400

Query: 407 NVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIET 466
            +G V+DVI+AI+EQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA+RTQ+ST EI+ 
Sbjct: 401 EIGTVVDVIQAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAKRTQDSTEEIQK 460

Query: 467 MISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEE 526
           MI  LQ+ A  S + ++   ++++ +     +  ++L  I  S +EI+ LN  IA A+EE
Sbjct: 461 MIQRLQQGARDSMQMMQSGTEQVKLSVDKSLMVRDALQQILNSIEEINALNAQIATASEE 520

Query: 527 QLTVSDEISSNLSTIKTLSGEMNLAIKQLGPVVVDLQRNVDDLNSAIAHIR 577
           Q +V++EI+ N++ I  +S +     +Q      DL R  + + + IAH +
Sbjct: 521 QSSVTEEININITNISEISDQTAEGARQSSDATEDLARLAESMEADIAHYK 571