Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  190 bits (483), Expect = 1e-52
 Identities = 134/462 (29%), Positives = 235/462 (50%), Gaps = 27/462 (5%)

Query: 135 LLKEAQNNSDALVNM--EVKAMNAVKGLFPDASGNYTVKGEPDVNM------------AV 180
           ++ EAQN  + +      V    A+  +  +AS  +T+   PD  +            A 
Sbjct: 220 IISEAQNKLEYVSRHWEGVIDQEALDNINTEASKVFTMLNGPDSILKRKGQQLDFNLQAS 279

Query: 181 QLLHSEE-----YHREKAKIMAPIDRFFQELETRTAQQFNQAAEQVKSTVLIGNISLVVV 235
           QLL++ E      ++    +   I+   Q +  +   + + A+ +  + VLI  +  V+V
Sbjct: 280 QLLNTVESNATAVNQSMGSLNKAIESTSQAVSVKAIDEIDSASYKTLALVLIAIVVAVLV 339

Query: 236 AIIAIIGYVVVNRKIVTPIDRMASVLQRADDNSDLTLRVEEKSDDELAVIGRTINKVLGS 295
           +I  I       R +   +D++ + L     + +LT ++++   DE A + R  N+++ S
Sbjct: 340 SIAVI-------RPLKNSLDKVNNALNILA-SGNLTHKLDDSGHDEFAELSRNCNRLVDS 391

Query: 296 YGSTISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALSSVSQS 355
             + I  I   ++ +++ ++   +IT Q      +Q  +++  ATA  +++S+   VS S
Sbjct: 392 LRTLIQGILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVDQVATATTQLSSSAMQVSTS 451

Query: 356 TNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVI 415
            + A      A++EA + + + ++  R    L  E  K  ++I ++ ++S ++G++LDVI
Sbjct: 452 ADEALNQIRQADEEAQHMRAIADENKRTILALADEVAKAGQVINKVHSDSASIGSILDVI 511

Query: 416 KAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKA 475
           + IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA RTQ+ST EI+ MI +LQ+  
Sbjct: 512 RGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQQMIQVLQQGT 571

Query: 476 EMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEIS 535
           + +   + +   +  S       AN +L +I  +    H   T IA A +EQ  VS ++S
Sbjct: 572 QEAVSVMELGRQQANSCVEKTEQANVALESISNAVHYAHDSGTHIANAAQEQNLVSQQVS 631

Query: 536 SNLSTIKTLSGEMNLAIKQLGPVVVDLQRNVDDLNSAIAHIR 577
             L  I  +S E      Q       + +  ++L +++   +
Sbjct: 632 EKLEHIAAISEETATGADQTAQSSHQVAQLAEELQASVGEFK 673