Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  187 bits (474), Expect = 1e-51
 Identities = 116/330 (35%), Positives = 186/330 (56%), Gaps = 2/330 (0%)

Query: 219 EQVKSTVLIGNISLVVVAIIAIIGYVVVNRKIVTPIDRMASVLQRADDNSDLTLRVEEKS 278
           +Q  ++ L+ +  +++ AI  ++G + +  + +  +  M + L +   N DLT R+E   
Sbjct: 274 DQALTSALVSSAIMLLCAISILLGVLYLLYRPILSLKAMVTELSKG--NGDLTKRLEIHC 331

Query: 279 DDELAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMA 338
           +D+L  I   IN+ + +  + + ++ Q +  IS   + +   T+ N  + S   +E E  
Sbjct: 332 EDDLGQISMGINQFIANLQAMMREVLQASAHISGSVERLNGETETNRHILSAHTKETEQI 391

Query: 339 ATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEII 398
             A+EEM++  + V+Q+ +    +     ++A  SKQV  +       L  E + T++ I
Sbjct: 392 VAAVEEMSATANDVAQNGSETASFTQLTNEQALASKQVVAQATETVNRLVREVEHTADKI 451

Query: 399 QQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQ 458
            Q+  ++ N+  VL VI  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ
Sbjct: 452 GQIDRDTINITQVLKVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQ 511

Query: 459 ESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNT 518
           +ST EIE  +S L++ +  +  ++ V+      T          L AI  S  +I+ LNT
Sbjct: 512 DSTAEIEETLSNLRDASNSAIHSMEVTKQTCLETASTTERVATDLDAIGSSVNQINDLNT 571

Query: 519 SIAAATEEQLTVSDEISSNLSTIKTLSGEM 548
            IA A EEQ +VS EI+ N+S I  ++ E+
Sbjct: 572 QIATAAEEQSSVSAEITRNMSAICDMANEL 601



 Score = 28.9 bits (63), Expect = 7e-04
 Identities = 22/104 (21%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 254 IDRMASVLQRADDNSDLTLRVEEKSDDELAVIGRTINKVLGSYGSTISKINQVNHTISSI 313
           I+   S L+ A +++  ++ V +++  E A     +   L + GS++++IN +N  I++ 
Sbjct: 517 IEETLSNLRDASNSAIHSMEVTKQTCLETASTTERVATDLDAIGSSVNQINDLNTQIATA 576

Query: 314 SDTIRSIT---DQNMKMSSQQDQELEMAATAMEEMTSALSSVSQ 354
           ++   S++    +NM        EL  +  +    T  L++ +Q
Sbjct: 577 AEEQSSVSAEITRNMSAICDMANELARSGESSRNETVNLATANQ 620