Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  192 bits (488), Expect = 3e-53
 Identities = 126/375 (33%), Positives = 198/375 (52%), Gaps = 8/375 (2%)

Query: 200 DRFFQELETRTAQQFNQAAEQVKSTVLIGNISLVVVAIIAIIGYVVVNRKIVTPIDRMAS 259
           DR  QE+  ++   +  A      ++++G  ++  V ++A +    + R+I  PI  +  
Sbjct: 174 DRAAQEMVLQSENAYKTAK---MLSIIVGFSTIFFVVVMAFL----LIRQIQNPIMWLLK 226

Query: 260 VLQRAD-DNSDLTLRVEEKSDDELAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIR 318
                   N    L +   + DE   +  + N++  +    +S+++     +SS ++ I 
Sbjct: 227 QTHEVSAGNLTNKLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEIS 286

Query: 319 SITDQNMKMSSQQDQELEMAATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFE 378
           S+   +      Q  EL   ATAM EM + +  V+++TN A   A  A   A    +   
Sbjct: 287 SVALHSSNNMETQQNELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVN 346

Query: 379 KTIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGE 438
            +I     + G  + T+ +I++L  +S N+G VL+VI+ IAEQTNLLALNAAIEAARAGE
Sbjct: 347 DSIVRIDKVAGAIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGE 406

Query: 439 QGRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGV 498
           QGRGFAVVADEVR+LA+RTQ+ST  I ++IS LQ +A  + +T++ S + M  T      
Sbjct: 407 QGRGFAVVADEVRTLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKARE 466

Query: 499 ANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAIKQLGPV 558
           A ES+  I  S   I ++N  IA ATEEQ  VS+E++ N++ I   S ++    KQ+   
Sbjct: 467 AGESIAKISSSVSCISQMNIQIATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMA 526

Query: 559 VVDLQRNVDDLNSAI 573
             DL      L   +
Sbjct: 527 CNDLSHLATQLQDMV 541