Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  196 bits (499), Expect = 2e-54
 Identities = 121/333 (36%), Positives = 188/333 (56%), Gaps = 8/333 (2%)

Query: 218 AEQVKSTVLIGNISLVVVAIIA-IIGYVV---VNRKIVTPIDRMASVLQR-ADDNSDLTL 272
           +EQ  S +      L+++  IA +IG  +   + + I  PI    + L   A+   DLT 
Sbjct: 272 SEQAMSDI---RFKLIMIGFIAFLIGTAIAWFIAKSITRPIAETTNALNDIAEGEGDLTR 328

Query: 273 RVEEKSDDELAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQQD 332
           R+E KS DE+A +    N+      +T+++++     +++ ++ + +IT++  +M+ +Q 
Sbjct: 329 RIEVKSKDEIAQLALAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMAKRQH 388

Query: 333 QELEMAATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQ 392
            E E  ATAM EM + +  V+ +   A + A  A +   + K + EK I   + L  E  
Sbjct: 389 LETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISLLADEIA 448

Query: 393 KTSEIIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRS 452
             ++ I +L   +  + +VL VI+ IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR+
Sbjct: 449 HAAKAINELERNTAQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRT 508

Query: 453 LAQRTQESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKE 512
           LA RTQ ST EI+ MI  LQ  A+ +  T+  S    Q+    +  A E+L AI  +   
Sbjct: 509 LASRTQASTSEIQQMIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAVST 568

Query: 513 IHKLNTSIAAATEEQLTVSDEISSNLSTIKTLS 545
           I ++N  IA+A  EQ  VS EI+ N++ I  ++
Sbjct: 569 ISQMNIQIASAANEQCAVSAEINKNVNNINDIT 601