Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 579 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  477 bits (1227), Expect = e-139
 Identities = 261/563 (46%), Positives = 359/563 (63%), Gaps = 1/563 (0%)

Query: 1   MKINTTMKLVFSAIGVGMAITMATVFQLDSLEQQVDRLSLIRYQSYQAADELRQSSDDLT 60
           M   T M +VFS I     IT    F + +  +  +  + IRY SYQ ADELRQSSDDLT
Sbjct: 1   MNTKTMMSVVFSTIVASAVITAVLSFNVKNKVELFNDAANIRYHSYQIADELRQSSDDLT 60

Query: 61  RLGRTYVVTGDEKYEKMYMDILDIRNGKKPRPESYHTIYWDLVLQYGQKPKPDGQTIALQ 120
           RL RTY VTGDEKYEKMYMDIL IRNG+KPRPE YH IYWDLVL YG KP+PDG ++A++
Sbjct: 61  RLARTYAVTGDEKYEKMYMDILAIRNGEKPRPEKYHQIYWDLVLNYGDKPQPDGASVAIK 120

Query: 121 QMMKDLGFSDREFALLKEAQNNSDALVNMEVKAMNAVKGLFPDASGN-YTVKGEPDVNMA 179
             M+ LGFSD EF  L++AQ NSDALV +EVKAMNAVKG+F D +   Y++KGEP++ MA
Sbjct: 121 SQMQALGFSDEEFRYLEQAQQNSDALVALEVKAMNAVKGIFIDPNTQTYSIKGEPNLTMA 180

Query: 180 VQLLHSEEYHREKAKIMAPIDRFFQELETRTAQQFNQAAEQVKSTVLIGNISLVVVAIIA 239
            +LLHS+EYHREKAKIM PID+FF  L+ RT  Q +   + +   +      L +V ++A
Sbjct: 181 RELLHSDEYHREKAKIMQPIDQFFTALDKRTDAQMDNRLDSLHMALNSSQFVLFLVILVA 240

Query: 240 IIGYVVVNRKIVTPIDRMASVLQRADDNSDLTLRVEEKSDDELAVIGRTINKVLGSYGST 299
           + G+++V  +IVTP+ +  S L     + +L  R+   +  E+  I   IN  + S  S+
Sbjct: 241 VGGFMIVKSRIVTPLVQTCSELLDIQKSKNLARRISVSTQGEIGEIVNQINLFISSLASS 300

Query: 300 ISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALSSVSQSTNMA 359
           ++  + +   ++ ++   ++    + + S++  +EL+ +A+AMEEMT+ L  VS+ST+ A
Sbjct: 301 LATTDGIAKEVADLAKQTKASIQVSRESSNRVAKELDASASAMEEMTTTLVHVSESTSNA 360

Query: 360 EEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKAIA 419
           E  A   E      +    + +   A L+ EF  T + +Q L  ES  V NVL VIKAIA
Sbjct: 361 ETRAAENENHVGVGQNTVSEALNAMAVLESEFTTTQDSMQHLVNESTQVSNVLSVIKAIA 420

Query: 420 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEMST 479
           EQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQ+ST EI+ +++ LQ +     
Sbjct: 421 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQDSTKEIDDIVASLQNRTNQVG 480

Query: 480 KTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNLS 539
            ++  +A+ MQ     +         I+ S   IH +NT +AA+TEEQ  VS EI+++L 
Sbjct: 481 SSVTQAANLMQKASVELQRIVTVFDDIRQSTAAIHGINTQVAASTEEQSLVSKEIATSLM 540

Query: 540 TIKTLSGEMNLAIKQLGPVVVDL 562
            I+  S E++  I+Q+    + L
Sbjct: 541 VIRDNSREVSQIIEQIESTSISL 563