Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  182 bits (461), Expect = 4e-50
 Identities = 108/315 (34%), Positives = 175/315 (55%), Gaps = 3/315 (0%)

Query: 232 LVVVAIIAIIGYVVVNRKIVTPIDRMASVLQR-ADDNSDLTLRVEEKSDDELAVIGRTIN 290
           L+ V I A   ++V+N  I +P++     L+  A    DL+ R+  +  DE+A +    N
Sbjct: 200 LISVPIFAF--FLVLNHSITSPLNDAIEALEDIAQGEGDLSQRLSTQGKDEVAHLAHAFN 257

Query: 291 KVLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALS 350
                 G  +  +  +  ++ + +  +    +++ + +    +E    ATA+ +M S   
Sbjct: 258 LFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHRETGSVATAVNQMLSTTH 317

Query: 351 SVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGN 410
            ++ +T  A + A S + +A  SK V + T+R+   L  E + +  I Q+L   S  +G+
Sbjct: 318 EMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKASEAITQKLGQASGQIGS 377

Query: 411 VLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISM 470
           +LDVI+AIAEQTNLLALNAAIEAARAG  GRGFAVVADEVR+LA RTQ+ST EI+ +IS 
Sbjct: 378 ILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRTQDSTNEIQKIISE 437

Query: 471 LQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTV 530
           +Q       ++   +  + +  +     A +++ AI      I  +NT +A+ATEEQ  V
Sbjct: 438 IQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHISDMNTQLASATEEQSLV 497

Query: 531 SDEISSNLSTIKTLS 545
           ++EI+ N+  I  L+
Sbjct: 498 TEEINRNICNISELT 512



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 26/152 (17%)

Query: 427 LNAAIEAARAGEQGRG------FAVVADEVRSLAQRTQESTGEIETMISMLQ---EKAEM 477
           LN AIEA     QG G           DEV  LA        +I  M+  LQ   +  + 
Sbjct: 220 LNDAIEALEDIAQGEGDLSQRLSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDN 279

Query: 478 STKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSN 537
             K + ++ ++                    SA+ IH+   S+A A  + L+ + E++SN
Sbjct: 280 DAKLLMLAVEESNQ-----------------SAEHIHRETGSVATAVNQMLSTTHEMASN 322

Query: 538 LSTIKTLSGEMNLAIKQLGPVVVDLQRNVDDL 569
                  +  +    +Q   V+ +  R+ + L
Sbjct: 323 TQQAADAATSVKSQAQQSKGVIDNTVRDTEKL 354