Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  188 bits (477), Expect = 6e-52
 Identities = 122/334 (36%), Positives = 184/334 (55%), Gaps = 8/334 (2%)

Query: 219 EQVKSTVLIGNISLVVVAIIAIIGYVVVNRKIVTPIDRMASVLQR-ADDNSDLTLRVEEK 277
           +  + +++I  I+LV+    A +  V  +R +V PI  MA  L   A    DLT R+  K
Sbjct: 195 QMAEKSLMILLIALVLTGATAFVIMVAAHRMVV-PIKNMADNLNDIAKGEGDLTKRLSVK 253

Query: 278 SDDELAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQ---QDQE 334
            +DE+A +GR  N  +      I  +      + + ++ I    DQ   MSSQ    + E
Sbjct: 254 GEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAANAIH---DQTKVMSSQLLSHNNE 310

Query: 335 LEMAATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKT 394
            +   TA+ EM+S  S V+Q+T    E   +A  +  N+++  + ++ E A L  +    
Sbjct: 311 TDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQRCVDASLEEIAALMEQINHA 370

Query: 395 SEIIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA 454
           +  I+ L+ +S  + +VL VI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA
Sbjct: 371 AGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA 430

Query: 455 QRTQESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIH 514
            RTQ ST EI  M+S L +    + KT+  S      +  +    +ESL ++  +   I+
Sbjct: 431 SRTQASTLEINEMLSALHKLVSQAVKTMDESQQSCVRSVESSRAISESLGSVTSAVTAIN 490

Query: 515 KLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEM 548
            ++T IA A  EQ +V++EI+ N+  I+ +  E+
Sbjct: 491 DMSTQIATAATEQSSVTEEINRNVYAIQEIVNEL 524