Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  189 bits (479), Expect = 3e-52
 Identities = 121/385 (31%), Positives = 201/385 (52%), Gaps = 3/385 (0%)

Query: 194 KIMAPIDRFFQELETRTAQQFNQAAEQVKSTVLIGNISLVVVAIIA-IIGYVVVNRKIVT 252
           K+   I++  + +  R  +   QA ++V +T  +  + L++VAI+A ++  + ++R++V 
Sbjct: 144 KVSNEINQLVKLITQRNHELGKQAEDKVNATEAL-LLGLILVAIVASLLSALFMSRRLVN 202

Query: 253 PIDRMASVLQRADDNSDLTLRVEEKSDDELAVIGRTINKVLGSYGSTISKINQVNHTISS 312
            + ++  V++   D  DLT + +    +EL  +G  +++V+      IS I Q +  +S 
Sbjct: 203 IVHQIKRVVEHLADG-DLTQKTQISGQNELCALGADLDRVIDHLRHMISDIAQASEHMSD 261

Query: 313 ISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANN 372
               +   ++ N         E +   TAM EM++   +V+     A  +   A ++A+ 
Sbjct: 262 QIGQLNVQSNANTHALQTHAVETDQVVTAMTEMSATAHNVAGDAASAARFTQQANEQADK 321

Query: 373 SKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIE 432
           SK+  E+       L G+    +  I ++   + ++  +LDVI  IA+QTNLLALNAAIE
Sbjct: 322 SKKAVEQAANTVVALVGKVDTAAHTIAEMNENTRHIATILDVIGDIADQTNLLALNAAIE 381

Query: 433 AARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEMSTKTIRVSADKMQST 492
           AARAGEQGRGFAVVADEVR+LA RTQ ST EI  M+  L+  A  +   +  +    Q  
Sbjct: 382 AARAGEQGRGFAVVADEVRALAARTQASTAEINQMLERLRTGANSAVNAMDETKQSCQDA 441

Query: 493 RGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAI 552
                +  ESL  +     +I+ L+  IA A EEQ  VS+EI+ NL+TI+ +  E+N + 
Sbjct: 442 ADTTTLVTESLETLTTYVFDINGLSNQIATAAEEQSAVSEEINRNLNTIREMVEELNQSG 501

Query: 553 KQLGPVVVDLQRNVDDLNSAIAHIR 577
           K        L    + L   ++H R
Sbjct: 502 KATLNSATSLAATKEQLTGVVSHFR 526