Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  195 bits (496), Expect = 4e-54
 Identities = 146/476 (30%), Positives = 238/476 (50%), Gaps = 47/476 (9%)

Query: 103 VLQYGQKPKPDGQTIALQQMMKDLGFSDREFALLKEAQNNS---DALVNME--------- 150
           ++QY    K  G    + Q ++D+ F    +  L ++Q  +     + N+E         
Sbjct: 66  IVQYQLSLKEQGN---VNQALRDIRFGSSGYFFLYDSQGKNLFHAVMPNLEGQNKIDMTD 122

Query: 151 -------VKAMNAVKGLFPDASGNYTVKGE-PDVNMAVQ------LLHSEEYHREKAKIM 196
                  V  +NA K    +  GN++   + P+ N  ++      ++   ++       +
Sbjct: 123 PRGTKIIVGLLNAAK----NGDGNFSFYFQKPNTNEQIEKIGYSMMIPGTDWMLGTGAYI 178

Query: 197 APIDRFFQELETRTAQQFNQAAEQVKSTVLIGNISLVVVAIIAIIGYVVVNRKIVTPIDR 256
             ID   ++  T   +Q       +  +  I  I+L++ AI A +  +V  +++VTPI  
Sbjct: 179 DDIDAVVEDYRTTVTEQM------IDKSYAILLIALLLAAITAPV-ILVTAQRMVTPIKN 231

Query: 257 MASVLQR-ADDNSDLTLRVEEKSDDELAVIGRTINKVLGSYGSTISKINQVNHTISSISD 315
           MA  L   A    DLT R+  K DDE+A +GR+ N  +    + I     V H  + +  
Sbjct: 232 MADNLNDIAKGEGDLTKRLAVKGDDEIAQLGRSFNLFVDKLQTIIG---DVAHATAKVKT 288

Query: 316 TIRSITDQNMKMSSQ---QDQELEMAATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANN 372
              +I DQ   MS Q    + E +   TA+ EM++  S V+Q+T    E   +A  +  N
Sbjct: 289 AANAIHDQTKVMSRQLISHNNETDQVVTAITEMSATASEVAQNTTQVAEATHAATGDVAN 348

Query: 373 SKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIE 432
           +++  + ++ E + L  +    +  IQ L+ +S  + +VL VI  IAEQTNLLALNAAIE
Sbjct: 349 AQRCVDASLEEISALMAQINNAASNIQSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIE 408

Query: 433 AARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEMSTKTIRVSADKMQST 492
           AARAGEQGRGFAVVADEVR+LA RTQ ST EI  M+S L +   ++ KT+  S      +
Sbjct: 409 AARAGEQGRGFAVVADEVRNLASRTQSSTLEINEMLSELHKLVSLAVKTMEESQQSCIRS 468

Query: 493 RGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEM 548
             +    +ESL ++  +   I+ ++T IA A  EQ +V++EI+ N+  I+ +  E+
Sbjct: 469 VDSSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVFAIQEIVNEL 524