Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  211 bits (538), Expect = 6e-59
 Identities = 157/572 (27%), Positives = 276/572 (48%), Gaps = 15/572 (2%)

Query: 17  GMAITMATVFQLDSLEQQVDRLSLIRYQSYQAADELRQSSDDLTRLGRTYVVTGDEKYEK 76
           G A   A + QLD      +R SL      +AA       + L  L +      D+    
Sbjct: 105 GQANLSALISQLDGSFSTFERDSLAMLTEREAA---LSKQEQLIGLKKKLENAADDA-SS 160

Query: 77  MYMDILDIRNGKKPRPESYHTIYWDLVLQYGQKPKPDGQTIALQQMMKDLGFSDREFALL 136
           + +DI+D+ N + P  +S       +    G         +  ++M K    S     +L
Sbjct: 161 VLLDIIDLENSQNPDAQSIAASASAIDTSMGNIITTIADLVTNEEMSKHELISKELDYIL 220

Query: 137 KEAQNNSDALVN--MEVKAMNAVKGLFPDASGNYTVKGEPDVNM---AVQLLHSEEYHRE 191
            E +N  + +     ++   + +K +  D      +   PD  +   A QL H++    +
Sbjct: 221 SETKNKLEYVNRHAQDIIDADTLKSVNEDTKKVLALLEGPDSMVLLKATQLNHAKSAMNQ 280

Query: 192 KAKI---MAPIDRFFQELETRTAQQFNQAAEQVKSTVLIGNISLVVVAIIAIIGYVVVNR 248
            A I   +  IDR  +++           +++  + +   +I  ++V +IAI+  V+++ 
Sbjct: 281 LATIEKDVKVIDRNMEDVSNNIESVAANMSQETIAKIDAASIRTIIVVLIAIVAAVIISF 340

Query: 249 KIVTPIDRMASVLQRADD---NSDLTLRVEEKSDDELAVIGRTINKVLGSYGSTISKINQ 305
            +V P+ R    +  A +   + +LT ++++   DE A + +  N+++ S    I  I  
Sbjct: 341 AVVAPLKRSLYQVNNALNVLASGNLTHKLDDSGHDEFAELAKNCNRLVDSLRGLIVGILD 400

Query: 306 VNHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALSSVSQSTNMAEEYAGS 365
            ++ +++ ++   +IT Q      +Q  +++  ATA  E++S+   VS S + A      
Sbjct: 401 RSNQLAAAAEQTSAITAQTTSGIQEQKSQVDQVATATTELSSSAQQVSMSADDALAQIKQ 460

Query: 366 AEKEANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKAIAEQTNLL 425
           A++EA + + + E+  R    L  E  K  ++I ++ ++S ++G++LDVI+ IAEQTNLL
Sbjct: 461 ADQEAKHMRTIAEENKRTILALADEVAKAGQVINKVQSDSASIGSILDVIRGIAEQTNLL 520

Query: 426 ALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEMSTKTIRVS 485
           ALNAAIEAARAGEQGRGFAVVADEVRSLA RTQ ST EI+ MI +LQ+ A+ +   + + 
Sbjct: 521 ALNAAIEAARAGEQGRGFAVVADEVRSLASRTQVSTREIQQMIEVLQQGAQQAVAAMDMG 580

Query: 486 ADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLS 545
             +  +       AN +L  I  S  + +   T IA A +EQ  VS ++S  L  I  +S
Sbjct: 581 RAQANACVDKTEQANLALETISQSVHKAYDAGTHIAHAAQEQNVVSQQVSEKLEHIAAIS 640

Query: 546 GEMNLAIKQLGPVVVDLQRNVDDLNSAIAHIR 577
            E  +   Q       + +  ++L +++   R
Sbjct: 641 EETAIGADQTAQSSHQVAKLAEELQASVGEFR 672