Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  180 bits (457), Expect = 1e-49
 Identities = 117/334 (35%), Positives = 190/334 (56%), Gaps = 6/334 (1%)

Query: 222 KSTVLIGNISLVVVAIIAIIGYVVVN--RKIVTPIDRMASVLQR-ADDNSDLTLRVEE-K 277
           ++T L   +S V   ++ I G V+V   +     ++R+A  L   A+ + DLT+R+    
Sbjct: 270 QATTLAWWMSAVGAGLLVIFGLVLVAIFKIQFKDLERVALALNDIAEGDGDLTVRIHTAN 329

Query: 278 SDDELAVIGRTINKVLGSYGSTISKINQVNHTIS-SISDTIRSITDQNMKMSSQQDQELE 336
           S DE+ ++    N+ +      IS+++++   +      +  S TD + +++ QQD E+ 
Sbjct: 330 SHDEIGILASGFNRFVERLHGMISRMHKIAGQLEYQAQGSSASATDNSQRIAVQQD-EVT 388

Query: 337 MAATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSE 396
           M ATA+ EM SA   ++ +     + A  A   +N+ ++   ++ +   +L  E +    
Sbjct: 389 MVATAVTEMASATEEIASNAEHTAQTAQDAVGLSNHGQKQVMQSQQSIRNLANEVETAGR 448

Query: 397 IIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQR 456
           II +L   S  + ++L  I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+QR
Sbjct: 449 IISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQR 508

Query: 457 TQESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKL 516
           T  ST EI+ MI  LQ+ A  + K++  S D  +++  +   A+ESL+ I  +  EI  +
Sbjct: 509 THSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDM 568

Query: 517 NTSIAAATEEQLTVSDEISSNLSTIKTLSGEMNL 550
            + IA A EEQ +V+ EI+ N  +I+ +S  +++
Sbjct: 569 ASQIATAAEEQTSVTSEINRNTESIREVSENLSI 602