Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  223 bits (568), Expect = 2e-62
 Identities = 133/359 (37%), Positives = 211/359 (58%), Gaps = 8/359 (2%)

Query: 223 STVLIGNISLVVVAII-AIIGYVVVNRKIVTPIDRMASVLQRADDNSDLTLRVEEKSDDE 281
           S+V IG +  V++A+I A+I Y+++ R I+TP++R+  V+ R + + DLTLR +  + DE
Sbjct: 265 SSVNIGILVFVIIALILAVITYLII-RSIITPVERITQVISRIEVSKDLTLRCDASTQDE 323

Query: 282 LAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMS---SQQDQELEMA 338
           L  I +  N ++GS+   I    QV  ++++I+ + +S+++  M  S   +QQ  E +M 
Sbjct: 324 LGEIAQHFNSMVGSFQQLIE---QVIDSVATINTSCKSVSENAMLASEGVAQQLNETDMV 380

Query: 339 ATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEII 398
           ATA+ EM + +  ++++T +A   AG     A   +   E+TI +   L  +   ++ ++
Sbjct: 381 ATAITEMGATIDEIAKTTELAALKAGKTHDNAQLGQTEVEQTILKIRQLSEQINSSASVV 440

Query: 399 QQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQ 458
            +L  +S  +G+VLDVI+ IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA RTQ
Sbjct: 441 DELERDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQ 500

Query: 459 ESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNT 518
            ST EI  +I  LQ +     + +  S  +   +      A E L  I      I  ++T
Sbjct: 501 TSTQEIANIIQTLQSRTRAIVQLMDASQKQGAESAEQAAAAGELLKLINTDVHNIMDMST 560

Query: 519 SIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAIKQLGPVVVDLQRNVDDLNSAIAHIR 577
            IAAA EEQ  V+ E++ N+  I+ ++ + + A         +L+   + L SA++H +
Sbjct: 561 QIAAAIEEQSMVAAEVNKNVVVIRDIAEDSSRAADANASASDELKSRAEYLVSAVSHFK 619