Pairwise Alignments

Query, 470 a.a., PepSY domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., PepSY-associated TM helix from Pseudomonas syringae pv. syringae B728a

 Score = 53.5 bits (127), Expect = 1e-11
 Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 30/206 (14%)

Query: 24  RW---HFYAGLFVVPFMLMLALTGLVMLFDDEIEQ-----ARYAEVLNVTPQAQVMPVSQ 75
           RW   H ++ L    F+LMLA+TGL ++F  EI+        Y E+   TP+  +    +
Sbjct: 8   RWSIVHTWSSLICTLFLLMLAVTGLPLIFHHEIDHLLGDAPHYKEMPADTPRLDL----E 63

Query: 76  QLAAVQKAYPEAQVTQFIPAHQPDLANRFSVLFSDGSTQFVTVSPYSAVVLGAIDRSESW 135
           QLA   +A+   +V Q+      D     ++  +   T+     P S+       R+   
Sbjct: 64  QLARAAEAHRPGEVMQYFGWDDEDPNGVMAITAATAGTE-----PNSSHTFALDARTGEA 118

Query: 136 YEWANS----------IHGTLLIGDWGDYLIEVAASLGMILLVSGIYLWLPLDNARKAGF 185
            E  ++          +H  +     G  L+     L ++ +VSG  L+ P    RK  F
Sbjct: 119 LEMPSANGGFMMVMLRLHVDMYANLPGKLLLAFMGLLFVVAIVSGTVLYAPF--MRKLEF 176

Query: 186 LKIRVGSGARIFWRDLHANLGGMLSL 211
            ++RV    R  W DLH NL G+++L
Sbjct: 177 GQVRVNKSRRTRWLDLH-NLIGVVTL 201



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 28/175 (16%)

Query: 24  RW---HFYAGLFVVPFMLMLALTGLVMLFDDEIEQARYAEVL--------NVTPQAQVMP 72
           RW   H   G+  + + L++ +TG++    D +  +   + L        +  P  Q  P
Sbjct: 188 RWLDLHNLIGVVTLTWALVVGVTGVISACADLLIASWRNDALATMIAPYKDAPPLTQRAP 247

Query: 73  VSQQLAAVQKAYPEAQVTQFI--PAHQPDLANRFSVLFSDGSTQF-------VTVSPYSA 123
            ++ L   + A P  Q   FI  P  +    + ++V F  G+T         V +   + 
Sbjct: 248 ATRLLEIAESAAPGMQA-DFIAFPGTRFSSEHHYAV-FLKGNTHLTAHLATPVLIDAQTL 305

Query: 124 VVLGAIDRSESWYEWANSIHGTLLIGDWGDYLIEVAAS----LGMILLVSGIYLW 174
            V   ++R   WY  A  +   L  GD+G   +++  +    L +I+L SG+YLW
Sbjct: 306 HVTAVVERP--WYMDALGMSQPLHFGDYGGMPMKILWAVLDVLTIIVLGSGVYLW 358