Pairwise Alignments

Query, 470 a.a., PepSY domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., PepSY-associated TM helix from Pseudomonas syringae pv. syringae B728a

 Score =  117 bits (292), Expect = 1e-30
 Identities = 129/460 (28%), Positives = 192/460 (41%), Gaps = 46/460 (10%)

Query: 24  RWHFYAGLFVVPFMLMLALTGLVMLFDDEIEQARYAEVLNVTPQAQVMPVSQQLAAVQ-K 82
           R HFY G+FV PFML+ AL+G+V     +IE + YA  L+   +   M +  Q+   Q  
Sbjct: 22  RLHFYIGVFVGPFMLVAALSGVVYALTPQIEDSLYARALHTDSRGPAMSLQAQIQRAQAS 81

Query: 83  AYPEAQVTQFIPAHQPDLANRFSVLFSD-----GSTQFVTVSPYSAVVLGAIDRSES--- 134
           + P   +    PA +     R  V+FSD        + + V P S  + G +    +   
Sbjct: 82  SGPGLSIAAVRPAAREGDTTR--VMFSDPGFGPSEHRALFVDPVSGEIRGDMKVYGTSGV 139

Query: 135 --WYEWANSIHGTLLIGDWGDYLIEVAASLGMILLVSGIYLWLPLDNARKAGFLKIRVGS 192
                W +  H  LL+GD G    E+AAS   +  + G+ LW      R+    +IR   
Sbjct: 140 LPLRTWIDQFHRGLLLGDIGRIYSELAASWLWVAALGGLVLWA----VRRR--RQIREHG 193

Query: 193 GARIFWRDLHANLGGMLSLVLLFFLISGLSWAGIWGGKLVQAWNTFPTYYTWGEKPQSVL 252
             R +    HA  G  L L LLFF  +GL+W+   G  +         YY W     SV 
Sbjct: 194 NVRRW----HATTGVWLLLGLLFFSATGLTWSQYAGDNI----GVLRAYYGW--STPSVA 243

Query: 253 THADLNHGSEKEMPWNLEQTPVPQSH-HHGGEHEMVAVNPQFGIDQVIAQAKALGFTQYR 311
           T    + G    MP ++      + H H     +  A++P    D V+A+A+A      +
Sbjct: 244 T----SLGKSAAMPMSMPMDEHAEHHMHMAPTTQATALDPAL-FDSVLARARAEHIDAAK 298

Query: 312 VAF-PRGETGVYTVSANTMAGDIVDPRDDRTAHFDQYSGALLTEVTWQDYSPFAKAMAAG 370
           V   P        V +     D   P        +  +  ++  V + DYS  AK    G
Sbjct: 299 VEIRPSASNDKAWVVSEI---DRSWPTQVDAVSINPQTLEVVDHVRFSDYSLPAKLTRWG 355

Query: 371 ISLHQGDL-SVWNKIANVLFCLAFILISVTGVVMWWLRRPT------GQARLGVPPRFEQ 423
           I  H G L  + N++  V+F      + V G VMWW RRP+       QA L    R   
Sbjct: 356 IDAHMGVLFGLANQLVLVVFASGLAAMVVMGYVMWWRRRPSLSQARNQQATLLSLWRSLN 415

Query: 424 DGVWKAGLATLLVIGVAFPLAGATIVLALLLDGLLVSRIA 463
            G   A +   L+ G A P+ G +++  ++LD LL  R A
Sbjct: 416 PGAQWALILVALLTGFALPVLGVSLLGFIVLDALLGYRRA 455