Pairwise Alignments

Query, 470 a.a., PepSY domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., PepSY-associated TM helix domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 70.1 bits (170), Expect = 1e-16
 Identities = 90/399 (22%), Positives = 155/399 (38%), Gaps = 64/399 (16%)

Query: 21  LTWRWHFYAGLFVVPFMLMLALTGLVMLFDDEIEQARYAEVLNVTPQAQVMPVSQQLAAV 80
           L W+WH + GLF    + ++ALTG V++F  E+E     E +    + + +  +Q L + 
Sbjct: 4   LLWKWHGWLGLFAALPLFIIALTGSVLVFKSELEHLLMPEKVLAASETR-LSFTQLLRSA 62

Query: 81  QKAYPEAQVT--QFIPAHQPDLANRFSVLFSDGSTQFVTVSPYSAVVLG-AIDRSESWYE 137
            +A P+ ++   QF P +  +    +         Q + V P    +L   +  S    +
Sbjct: 63  DEALPQHEILGWQFAP-NAGEADKLYVAKQGTYDWQLLFVDPSQGSLLSQPVGLSHYLLD 121

Query: 138 WANSIHGTLLIGDWGDYLIEVAASLGMILLVSGIYLWLPLDNARKAGFLKIRVGSGARIF 197
           W   +H TLL    G  +  + + L ++L +SG  L           F  +R G   R+F
Sbjct: 122 WLLELHYTLLADHLGLAVTALVSILLILLSLSGFILHRQFWRT----FFTLRWGKSLRLF 177

Query: 198 WRDLHANLGGMLSLVLLFFLISGLSWAGIWGGKLVQAWNTFPTYYTWGEKPQSVLTHADL 257
             D H  LG + + + L      L + G W       WN       W E     L     
Sbjct: 178 LSDSHKMLGIIGAPLFLI-----LGFTGAW-------WNIEHIIEEWHEPDPKTLI---- 221

Query: 258 NHGSEKEMPWNLEQTPVPQSHHHGGEHEMVAVNPQFGIDQVIAQAKAL--GFTQYRVAFP 315
                           V QS++          N Q  ++ ++ QA  +  GF  + V FP
Sbjct: 222 ----------------VTQSYY----------NKQLDVEALLTQATQVIPGFQTHYVRFP 255

Query: 316 -RGETGVYTVSANTMAGDIVDPRDD--RTAHFDQYSGALLTEVTWQDYSPFAKAMAAGIS 372
            +   G++   A    G +   R D      FD  SG L   V         + + +   
Sbjct: 256 DKSYAGIHLFGAAQDRGAL---RSDYGSIVSFDDKSGQLSASVDATKAGALYQFVDSFRP 312

Query: 373 LHQGDLSVWNKIANVLFCLAFI---LISVTGVVMWWLRR 408
           LH G+      ++ +++C+      L++++G +MW  RR
Sbjct: 313 LHYGNFG--GLVSKIIWCVVGFLPSLMALSGYLMWRARR 349