Pairwise Alignments

Query, 312 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  173 bits (439), Expect = 4e-48
 Identities = 98/289 (33%), Positives = 152/289 (52%), Gaps = 3/289 (1%)

Query: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72
           L  F+ VV  GSF+ A  KLG++ SA+SK I++LEQ L ++L +RTTR L +T AG + +
Sbjct: 7   LPIFVTVVECGSFSLAGQKLGLSKSAISKRISQLEQHLGIQLLQRTTRSLSLTDAGARYF 66

Query: 73  DQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKLR 132
           +     V   Q+ ++  S     P G L ++ P  F    + P +  FL +YP IQL+++
Sbjct: 67  EYIRPAVQLTQEGLDAISELQQTPRGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQLQMQ 126

Query: 133 AADGDIDLFKHNIDVAFRLTDKPDENLVLRELCKTNLVLCASPEYLAQRGTPIHPTDLAE 192
             D   DL     D+A R+ + PD +L+ R++     V+CASP YL Q G P+ P +L +
Sbjct: 127 MDDKITDLIAGGFDLAIRIGELPDSSLIARKIAPCLSVICASPAYLTQHGLPMTPCELTQ 186

Query: 193 HDCLYLAETDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFHDFVVQD 252
           H+CL+ +       W+F        V   G Y VN S        + LGI     F+V+ 
Sbjct: 187 HNCLFYSYFQDGVEWSFHSPDGMQRVQPKGNYQVNNSDAINQACLDGLGIANLPRFIVEP 246

Query: 253 ALAAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLEHL 301
            L  G +  +L ++ +    HG  A+ Y Q KY P ++ V I+F++  L
Sbjct: 247 DLQTGHLQALLTDYPLPE--HGIYAV-YPQRKYQPTKVTVLIEFLMAKL 292