Pairwise Alignments

Query, 314 a.a., DNA-binding transcriptional regulator DsdC from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella sp. ANA-3

 Score =  146 bits (369), Expect = 5e-40
 Identities = 92/289 (31%), Positives = 144/289 (49%), Gaps = 9/289 (3%)

Query: 19  LSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVVLTEEGQ 78
           L+ +  FE AARH SF+ AA+EL +T +A+SH+I  LE+ +G+KLF R +R ++LTEEGQ
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQ 67

Query: 79  RIYHSLQKTLNNLNQEITDIKNGETSGLLTIYSRPSFAQCWLVPRIHAFKELYPSIDLKL 138
             +  ++     L      +      G LT+   PSFA  WLVPR+  F E  P ID+++
Sbjct: 68  SYFLDIKDIFTQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKNPDIDVRI 127

Query: 139 LTGNENISFQGSGIDVAIYFDDHMPDKLSCKEIFSETIIPVCTPEYAQKYSLTSSMDNLY 198
              +   S     +DVAIY+       L   ++ +E +IPVC+P         S  ++L 
Sbjct: 128 KAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPLSKPEDLK 187

Query: 199 NTTLLHDNQAWNYNSDADEWKTWANANQLENLENISRIGFDRSDLAVIAAINNAGIAMGR 258
             TLLHD           +W+ W     + ++       F  S L + AA +  G+A+G 
Sbjct: 188 YHTLLHD-------MSRHDWQAWFRQCGIHDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 259 FSLVKSRLSSGELMTPYPNTEVICKQRYYVATLPNKHN-QKVKLFIDWL 306
             L +  + +G L+ P+    ++ K  YY+    N     KV  F +W+
Sbjct: 241 SVLARPDIKAGRLVCPFQEV-LVSKDAYYLVCQQNHAELGKVVAFREWM 288