Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., putative Cytochrome bd2, subunit II from Pseudomonas fluorescens FW300-N2E2

 Score =  132 bits (332), Expect = 1e-35
 Identities = 101/365 (27%), Positives = 167/365 (45%), Gaps = 47/365 (12%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L LIW  +I   ++ ++I DGFD+G+G L P + + E D+ VM+N++AP WDGN+ WL+ 
Sbjct: 5   LPLIWAVVIIFGIMMYVIMDGFDLGIGILFPFV-KGERDRDVMMNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
            G  LF A+PL Y+   S+LY+ + L+L+ L  R +A E+R K      R + D +    
Sbjct: 64  GGAGLFGAFPLAYSVVLSALYLPLILMLIGLIFRGVAFEFRFKAKAEK-RHLWDKAFIGG 122

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALVQGSA 186
            L      GVA G  + G       ++   + G  +   TPF++  G   +    + G  
Sbjct: 123 SLTATFFQGVALGAFIDGF-----EVVNRQFVGGSLGWFTPFAMFCGLALIAAYALLGCT 177

Query: 187 WLTLKT----SDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNP 242
           WL +KT     + +H  AR  A + VL + G+  I   + H                   
Sbjct: 178 WLIMKTEGKLQEQMHDLARPLAFV-VLAVIGIVSIWTPLAHA------------------ 218

Query: 243 LNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMA--MGVFLSAKWKNDAITFVCASVTNAC 300
                   A  W T    +   WF P+  L++    G+F +     +   F+   V    
Sbjct: 219 ------DIAARWFTLPNLF---WFLPVPILVLVTLYGLFRAVARNANYTPFILTLVLIFL 269

Query: 301 IILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRT 360
                G +++P I+P       S+++WDA+S  ++   M      ++P+IL YT +SY  
Sbjct: 270 GYSGLGISLWPNIVPP------SISIWDASSPPQSQGFMLVGTLFIIPLILVYTFWSYYV 323

Query: 361 MFGRL 365
             G++
Sbjct: 324 FRGKV 328