Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., ubiquinol oxidase subunit II from Pseudomonas fluorescens FW300-N2E3

 Score =  136 bits (343), Expect = 7e-37
 Identities = 105/364 (28%), Positives = 169/364 (46%), Gaps = 45/364 (12%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L LIW  +I   ++ +++ DGFD+G+G L P + +   D+ VM+N++AP WDGN+ WL+ 
Sbjct: 5   LPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFI-KGHRDRDVMMNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
            G ALF A+PL Y+   S+LY+ + L+L+ L  R +A E+R K      R I D      
Sbjct: 64  GGAALFGAFPLAYSVVLSALYLPLILMLIGLIFRGVAFEFRFKAKDHK-RHIWDKCFIGG 122

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALVQGSA 186
            L      GVA G  + G+P     ++   + G  +D +TPFS+  G   ++   + G  
Sbjct: 123 SLTATFFQGVALGAFIDGIP-----VVNRQFAGGTLDWLTPFSLFCGVALIVAYALLGCT 177

Query: 187 WLTLKTSDILHKKARLTAQ---ISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPL 243
           WL +KT   L K+    A+     VL + G+  I   + H                    
Sbjct: 178 WLIMKTEGKLQKQMHDLARPLAFVVLAVTGIVSIWTPLAHA------------------- 218

Query: 244 NKVVFQQAGAWLTNFERYPWMWFAPMGGL-MMAMGVFLSAKWKNDAIT-FVCASVTNACI 301
                + A  W T    +   WF P+  L ++ M   L A  +N   T F+   V     
Sbjct: 219 -----EIAARWFTLPNLF---WFLPVPILVLVTMYGLLRAVARNAHYTPFLLTLVLIFLG 270

Query: 302 ILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRTM 361
               G +++P I+P       S+++WDA +  ++   M      ++P IL YT +SY   
Sbjct: 271 YSGLGISLWPNIVPP------SISIWDAAAPPQSQGFMLVGTLFIIPFILGYTFWSYYVF 324

Query: 362 FGRL 365
            G++
Sbjct: 325 RGKV 328