Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

 Score =  371 bits (952), Expect = e-107
 Identities = 183/380 (48%), Positives = 255/380 (67%), Gaps = 2/380 (0%)

Query: 1   MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60
           MF+Y+ L+L+WW LIG LLIGF +TDGFDMG  AL+P +G++++++RV IN+IAPHWDGN
Sbjct: 1   MFDYEVLKLVWWVLIGVLLIGFALTDGFDMGAMALMPFVGKTDNERRVAINTIAPHWDGN 60

Query: 61  QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120
           QVW ITAGGALFAAWP+VYA +FS LY AM L+L AL+ RP+  +YR+K++ P WR   D
Sbjct: 61  QVWFITAGGALFAAWPMVYAVAFSGLYWAMLLVLFALFCRPVGFDYRSKVEDPRWRSAWD 120

Query: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180
            ++ + G +P L+FGVAFGNL  GLPF L+ L+   Y GSF  L+ PF++L G + + M 
Sbjct: 121 WALFVGGAVPALVFGVAFGNLFLGLPFQLDELMRSTYQGSFFALLNPFALLCGIVSLSML 180

Query: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLC-LFGLFIIGGFMVHGMNGYLIVSSLDYNAI 239
              G AWL L+T   L +++R   ++  L  L G    G +++ G+ G+  +S  D  A 
Sbjct: 181 SAHGGAWLMLRTDGALAERSRQATRLCALVFLVGFLAAGLWLMLGVQGFTQLSVTDPGAA 240

Query: 240 SNP-LNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTN 298
            NP L+K V Q    WL N+ RYP    AP+ G++ A+   L +   +   +FV  S+  
Sbjct: 241 LNPLLDKQVVQDNAGWLGNYGRYPITLIAPVAGILGALLALLGSSRNSGGASFVGTSLMI 300

Query: 299 ACIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSY 358
              I TAGFA+FPF+ PSS +P+ SLT+WDA SS++TL IM  VA + +P+IL YT +SY
Sbjct: 301 VGSICTAGFALFPFVFPSSLDPASSLTIWDAVSSKKTLGIMFVVACIFVPLILCYTLWSY 360

Query: 359 RTMFGRLDKQYIERNHHSLY 378
             M+GRL+++ IE N H LY
Sbjct: 361 VRMWGRLNQKTIEANPHGLY 380