Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

 Score =  143 bits (361), Expect = 6e-39
 Identities = 106/367 (28%), Positives = 185/367 (50%), Gaps = 45/367 (12%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L LIW  +I   ++ +++ DGFD+GVG L P + Q  SD+ VM+N++AP WDGN+ WL+ 
Sbjct: 5   LSLIWAVIIIFGIMMYVVMDGFDLGVGILFPFV-QDSSDRDVMMNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
            G  LFAA+PL Y+   S+LY+ +  +L+ L  R +A E+R K+     + + D +    
Sbjct: 64  GGAGLFAAFPLAYSVVLSALYLPIIFMLMGLIFRGVAFEFRFKV-VRERQHVWDKAFIGG 122

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALVQGSA 186
            L+     GV  G  + GLP    A     Y G  +D +TPFS+  G   ++   + G  
Sbjct: 123 SLVATFFQGVVLGAFISGLPVEDRA-----YAGGALDWLTPFSLFCGLALIVAYALLGCT 177

Query: 187 WLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPLNKV 246
           WL ++T+  L ++      I +  ++ + ++ G          IVS   +  +++P    
Sbjct: 178 WLMMRTAGDLQRRMH---DIGIPLVWAVLVVTG----------IVSL--WTPLTHP---- 218

Query: 247 VFQQAGAWLTNFERYPWMWFAPMGGLMM--AMGVFLSAKWKNDAITFVCASVTNACIIL- 303
               A  W   F     ++F P+  L++  A G+  S +   + + F+   +T A I L 
Sbjct: 219 --DIAERW---FSMPNLLYFMPVPVLVLLCAFGLLRSIQRYANYMPFL---LTLALIFLG 270

Query: 304 --TAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRTM 361
               G +++P I+P       S+++W+A +  ++       A ++LP+IL YTA+SY   
Sbjct: 271 YSGLGISLWPNIIPP------SVSIWEAAAPPQSQGFTLVGALLILPLILMYTAWSYYVF 324

Query: 362 FGRLDKQ 368
            G++  +
Sbjct: 325 RGKVSAE 331