Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., cytochrome bd quinol oxidase subunit 2 apoprotein from Pseudomonas syringae pv. syringae B728a

 Score =  127 bits (320), Expect = 3e-34
 Identities = 100/364 (27%), Positives = 167/364 (45%), Gaps = 45/364 (12%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L LIW  +I   ++ +++ DGFD+G+G L P +  S SD+ VM+N++AP WDGN+ WL+ 
Sbjct: 5   LPLIWAIIIVFGIMMYVVMDGFDLGIGILFPFMKDS-SDRDVMMNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
            G ALF A+PL Y+   S+LY+ +  +L+ L  R +A E+R K  T   R   D +    
Sbjct: 64  GGAALFGAFPLAYSVVLSALYLPLMFMLMGLIFRGVAFEFRFKA-TELKRHWWDKAFIGG 122

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALVQGSA 186
            L      GVA G  ++G+P     ++   + G  +D ++PF +  G   ++   + G  
Sbjct: 123 SLAATFFQGVALGTYIEGIP-----VVDRQFAGGSLDWLSPFPMFCGLALIVAYALLGCT 177

Query: 187 WLTLKTSDILHKKARLTAQ---ISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPL 243
           WL +KT   L K     A+   ++VL + G+  +   + H                    
Sbjct: 178 WLIMKTEGSLQKAMHDLARPLALAVLAVMGVVSLWTPLAHA------------------- 218

Query: 244 NKVVFQQAGAWLTNFERYPWMWFAPMGGL-MMAMGVFLSAKWKNDAIT-FVCASVTNACI 301
                  A  W   F      WF P+  L ++ M     A  +N   T F+   +     
Sbjct: 219 -----DIAHRW---FSMPNLFWFMPVPILVLVTMYSLFKAVARNAHYTPFLLTLLLIFLG 270

Query: 302 ILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRTM 361
               G +++P I+P       S+++W A +  ++   M      ++P IL YT +SY   
Sbjct: 271 YSGLGISLWPNIIPP------SVSIWTAAAPPQSQGFMLVGTLFIIPFILGYTFWSYYVF 324

Query: 362 FGRL 365
            G++
Sbjct: 325 RGKV 328