Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., Cytochrome bd ubiquinol oxidase, subunit II (NCBI) from Rhodospirillum rubrum S1H

 Score =  135 bits (341), Expect = 1e-36
 Identities = 113/369 (30%), Positives = 170/369 (46%), Gaps = 59/369 (15%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L LIW  LI   +  +++ DGFD+G+G L P LG  +   R M NSIAP WDGN+ WL+ 
Sbjct: 5   LPLIWGMLIAFAVFAYVVLDGFDLGIGILFPFLGGEDERNRAM-NSIAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYR--AKIDTPSWRKICDISIS 124
            GG LFAA+P  Y+   ++ Y  +  +LLAL  R +A E+R  AK     W         
Sbjct: 64  GGGGLFAAFPEAYSVLMTAFYAPVIAMLLALVFRGVAFEFRFMAKRGKRFW----TAGFF 119

Query: 125 LSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALVQG 184
              L+  L  G+  G  +QG+ F         Y G + D  +PFS+L+G   V    + G
Sbjct: 120 AGSLMAALCQGMMLGAFVQGIAFEDGR-----YAGGWFDWFSPFSLLTGAAVVCGYSLLG 174

Query: 185 SAWLTLKT----SDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAIS 240
           + WL +KT    +D   + ARL   ++++ +                 + VS+L      
Sbjct: 175 AGWLAIKTDGPLADFAFRIARLAGVVTLVAI-----------------VAVSAL------ 211

Query: 241 NPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMG-VFLSAKWKNDAITFVCA--SVT 297
            PL  V    A  W         +W AP    ++ +G V L A  +   +T   +   + 
Sbjct: 212 TPL--VAPLAAERWFGP----QMLWHAPAPIAVVVLGAVLLRAIARRRELTLFLSGLGLF 265

Query: 298 NACIILTAGFAM--FPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTA 355
             C I   GFA+  +P+I+P        +T   A + E  L  +   A V++PIIL YTA
Sbjct: 266 ATCYI---GFALSKYPYIIPD------HVTFRAAAADEAALAFLLPGALVLIPIILGYTA 316

Query: 356 FSYRTMFGR 364
           ++Y    G+
Sbjct: 317 YAYWVFRGK 325