Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., cytochrome d ubiquinol oxidase subunit 2 from Phaeobacter inhibens DSM 17395

 Score =  160 bits (404), Expect = 6e-44
 Identities = 115/372 (30%), Positives = 176/372 (47%), Gaps = 56/372 (15%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L  IW G+I   ++ +++ DGFD+GVG L P    SE D+  M+NSIAP WDGN+ WL+ 
Sbjct: 5   LSFIWAGIIAFAVLTYVVLDGFDLGVGILFPF-ATSERDRATMMNSIAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
            GG LFA +PL YA    +LY+ + L+LLAL  R +A EYR +  T  WR + D +    
Sbjct: 64  GGGGLFAVFPLAYAVIMPALYMPITLMLLALVFRGVAFEYRWR--TTRWRGVWDSAFFGG 121

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALVQGSA 186
            ++   + G+A G L+QG+     A     Y G + D +TPFSVL+G   +    + G+ 
Sbjct: 122 SVVAATMQGIALGALVQGVEVEGRA-----YAGGWWDWLTPFSVLTGLAVLTGYALLGAT 176

Query: 187 WLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPLNKV 246
           WL +KT   L ++ R                      G   +L   +L   A+ + L   
Sbjct: 177 WLNMKTEGELQRQMR----------------------GYARWLGAGTLAAIALVSLLTP- 213

Query: 247 VFQQAGAWLTNFERYPWMWFAPMGGL----------MMAMGVFLSAKWKNDAITFVCASV 296
            FQ           Y   WF   G L          + +  +F   K   DA  F+ A  
Sbjct: 214 -FQD--------PEYFRRWFNLPGSLFSLLVPGLVALCSYALFQGLKGSRDAQPFLAALG 264

Query: 297 TNACIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAF 356
                 +  G + +PFI+P        LT+ +A + + +L      A V++P+IL YTA+
Sbjct: 265 LFVLSFIGIGISFYPFIVPP------GLTIAEAAAPDESLMFTLVGAVVLVPLILGYTAY 318

Query: 357 SYRTMFGRLDKQ 368
           +Y    G+++ +
Sbjct: 319 AYWVFRGKINPE 330