Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (RefSeq) from Shewanella loihica PV-4

 Score =  418 bits (1075), Expect = e-121
 Identities = 192/379 (50%), Positives = 270/379 (71%), Gaps = 1/379 (0%)

Query: 1   MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60
           MF+Y+ LR +WW LIG L IGF +TDGFDMGVGALLPI+G+ ++++R+MINSIAPHWDGN
Sbjct: 1   MFDYEILRFVWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINSIAPHWDGN 60

Query: 61  QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120
           QVWLITAGGALFAAWP+VYA SFS  Y+AM L+L AL+LRP+  +YR+KI+ P WRK  D
Sbjct: 61  QVWLITAGGALFAAWPMVYAVSFSGFYVAMMLVLFALFLRPVGFDYRSKIEDPRWRKAWD 120

Query: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180
            ++ + G +PPL+ GVAFGNL+QG+PF+ +  L   YHG    L+ PF +L+G + V M 
Sbjct: 121 WALFVGGFVPPLIIGVAFGNLLQGVPFNFDEYLRATYHGGLFGLLNPFGLLAGLVSVSMI 180

Query: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGG-FMVHGMNGYLIVSSLDYNAI 239
           ++QG++WL +KT   L  +A    Q++   +  LF + G ++ +G++GY++ S++D +  
Sbjct: 181 IMQGASWLQMKTEGELRVRAATATQVAAALVAVLFTLAGVWLANGIDGYVVTSTIDTHGA 240

Query: 240 SNPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNA 299
           SNP  K V  +AGAWL N+++YP     P+ G+ M +   L++++      F+ +S+  A
Sbjct: 241 SNPALKTVAVEAGAWLANYDKYPVTMLFPILGIAMPVLALLASRFNRSGFAFLFSSLAVA 300

Query: 300 CIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYR 359
            +ILT G AMFPF+MPSS EP+ SLT+WDAT+S  TL +MT  A + +PI+L YT ++Y 
Sbjct: 301 MVILTCGAAMFPFVMPSSLEPNVSLTMWDATASHMTLTVMTWAAAIFVPIVLSYTIWTYF 360

Query: 360 TMFGRLDKQYIERNHHSLY 378
            MFGRL + YIE N  SLY
Sbjct: 361 KMFGRLSRSYIEDNKTSLY 379