Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., Probable integral membrane cytochrome D ubiquinol oxidase (subunit II) CydB (cytochrome BD-I oxidase subunit II) from Mycobacterium tuberculosis H37Rv

 Score =  191 bits (484), Expect = 3e-53
 Identities = 120/370 (32%), Positives = 185/370 (50%), Gaps = 43/370 (11%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPI-----LGQSESDKRVMINSIAPHWDGNQ 61
           L+ +W+G+I AL +GF I +GFD GVG L+       +G  E+ +R  +N+I P WDGN+
Sbjct: 3   LQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNE 62

Query: 62  VWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDI 121
           VWLITAG A+FAA+P  YAT FS+LY+ +  IL  + LR +A+E+R KID P WR   D 
Sbjct: 63  VWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADF 122

Query: 122 SISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMAL 181
            I+    +P LL+GVAF  L++GLP   N  + +    S  D++  +++L G     +  
Sbjct: 123 GIAAGSWLPALLWGVAFAILVRGLPVDANGHVAL----SIPDVLNAYTLLGGLATAGLFS 178

Query: 182 VQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISN 241
           + G+ ++ LKTS  +   A   A    L + GL  + GF                     
Sbjct: 179 LYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGL--VAGF--------------------- 215

Query: 242 PLNKVVFQQAGAWLTNFERYPWMWFA-PMGGLMMAMGVFLSAKWKNDAITFVCASVTNAC 300
                     G W        W W    + G   A    L  +  +D   F+C  +  A 
Sbjct: 216 ----------GLWTQLAYGKDWTWLVLAVAGCAQAAATVLVWRRVSDGWAFMCTLIVVAA 265

Query: 301 IILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRT 360
           +++    A++P ++PS+  P  SLT+ +A+S+  TL IMT V     P+ + Y  ++Y  
Sbjct: 266 VVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLKIMTWVTAFFAPLTVAYQTWTYWV 325

Query: 361 MFGRLDKQYI 370
              R+  + I
Sbjct: 326 FRQRISAERI 335