Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., cytochrome d ubiquinol oxidase, subunit II (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  218 bits (555), Expect = 2e-61
 Identities = 120/368 (32%), Positives = 194/368 (52%), Gaps = 30/368 (8%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L  IW+ L G L   + + DGFD G+G LLP   ++E+++R + N+  P WDGN+VWLIT
Sbjct: 2   LETIWFVLWGLLWAVYFVLDGFDFGLGTLLPFAARNEAERRTIYNAAGPFWDGNEVWLIT 61

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
           AGG  FAA+P  YA  FS+LY  + ++L AL  R ++ E+R KID+P WRK+ D+   L 
Sbjct: 62  AGGVTFAAFPKAYAVMFSALYAPLLILLFALIFRAVSFEFRNKIDSPGWRKVWDVFQFLG 121

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALVQGSA 186
             +P LLFGVAF NL  G+P   N +    YHG+ + L+  + +L G   VLM  + G+ 
Sbjct: 122 NFVPALLFGVAFANLFMGIPVDGNGV----YHGNLLKLLNLYGLLGGVFFVLMFALHGAL 177

Query: 187 WLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPLNKV 246
           W+ +K++  LH +A   A+                  G+   L+ ++L + A +     +
Sbjct: 178 WMGIKSTGDLHDRAVALAR------------------GIWPLLLCAALAFLAATAVYTSL 219

Query: 247 VFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNACIILTAG 306
                     N+ ++P +   P+  +   +         +  + +VC +V   C+     
Sbjct: 220 --------YVNYMKFPPLLVFPILAVASLLTTRFFIASNSVGMAWVCNAVFIVCVTFFGV 271

Query: 307 FAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRTMFGRLD 366
           F M+P ++PSS +P+ S+T+ +  SS  TL IM  V  + +PI+L Y A+ Y     ++ 
Sbjct: 272 FGMYPALLPSSMDPAFSVTIANGASSPLTLKIMLTVVAIFVPIVLAYQAWVYSVFTHKIT 331

Query: 367 KQYIERNH 374
            + +E  H
Sbjct: 332 DEDLEDEH 339