Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  423 bits (1087), Expect = e-123
 Identities = 195/379 (51%), Positives = 274/379 (72%), Gaps = 1/379 (0%)

Query: 1   MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60
           MF+Y+ LR+IWW LIG L IGF +TDGFDMGVGALLPI+G+ ++++R+MIN+IAPHWDGN
Sbjct: 1   MFDYEMLRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINTIAPHWDGN 60

Query: 61  QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120
           QVWLITAGGALFAAWP+VYA SFS  Y+AM L+L AL++RP+  +YR+KI+ P WRK  D
Sbjct: 61  QVWLITAGGALFAAWPMVYAVSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWD 120

Query: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180
            ++ + G +PPL+ GVAFGNL+QG+PF+ +  L   YHG    L+ PF +L+G + V M 
Sbjct: 121 WALFVGGFVPPLIIGVAFGNLLQGVPFNFDEFLRATYHGGLFGLLNPFGLLAGLVSVTMF 180

Query: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGG-FMVHGMNGYLIVSSLDYNAI 239
           ++QG+AWL +KT   L  +A    Q+  L +  LF   G ++ +G++GY++ S+LD+NA+
Sbjct: 181 MMQGAAWLQMKTEGELRVRAANATQLFALLVAVLFAAAGVWLANGIDGYVVTSALDHNAV 240

Query: 240 SNPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNA 299
           SNP  K V  +AGAWL N+++YP     P+ G+ + + V + ++       F+ +S+  A
Sbjct: 241 SNPTLKTVAVEAGAWLANYDKYPITMLFPVLGVALPLLVIVVSRLNRSGFAFLFSSLAVA 300

Query: 300 CIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYR 359
            +ILT G AMFPF+MPSS +P+ SLT+WDAT+SE TL +MT  A V +PI+L YT ++Y 
Sbjct: 301 MVILTCGAAMFPFVMPSSLDPNVSLTMWDATASEMTLTVMTWAAIVFVPIVLSYTVWTYF 360

Query: 360 TMFGRLDKQYIERNHHSLY 378
            MFGRL +++IE N  SLY
Sbjct: 361 KMFGRLSRKHIEDNKASLY 379