Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., cytochrome d ubiquinol oxidase, subunit II (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  216 bits (550), Expect = 7e-61
 Identities = 121/356 (33%), Positives = 196/356 (55%), Gaps = 38/356 (10%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L  IW+ L G L   + + DGFD+G+G LLP + ++E ++R + NS  P WDGN+VWLIT
Sbjct: 2   LETIWFVLWGLLWAVYFVLDGFDLGMGTLLPFVTRNEVERRTLYNSAGPFWDGNEVWLIT 61

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
           AGG  FAA+P  YA  FS+LY  + ++L AL +R ++ E+R K+D+P WRK+ D+   L 
Sbjct: 62  AGGVTFAAFPKAYAVMFSALYAPLLMLLFALIMRAVSFEFRNKVDSPGWRKLWDVFQFLG 121

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALVQGSA 186
             +P LLFGVAF NL  G+P   + +    YHG+ + L+ P+ +  G   VLM  + G+ 
Sbjct: 122 NFVPALLFGVAFANLFMGIPIDKDGV----YHGNLLLLLNPYGLAGGVFFVLMFSLHGAL 177

Query: 187 WLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPLNKV 246
           WL +K+   LH +A  TA+     L G+ ++            +  +  Y  +       
Sbjct: 178 WLAIKSQGDLHARAVRTAKALWPYLVGVAVL-----------FLAMTAAYTTL------- 219

Query: 247 VFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNACIILTAG 306
                  W +N+ + P +   P    ++A+   L+ ++   + + V A V +A  I++  
Sbjct: 220 -------W-SNYAKVPPLMIFP----VLAVASLLTIRFLLSSDSVVLAWVFSALFIISVT 267

Query: 307 F----AMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSY 358
           F     MFP ++PSS +P+  +++++  SS  TL IM GV  + +PI++ Y A+ Y
Sbjct: 268 FFGVLGMFPNLLPSSMDPAAHVSIYNGASSPLTLKIMLGVVAIFVPIVIAYQAWVY 323