Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 383 a.a., cytochrome bd-type quinol oxidase, subunit 2 cydB from Caulobacter crescentus NA1000

 Score =  325 bits (832), Expect = 2e-93
 Identities = 164/365 (44%), Positives = 237/365 (64%), Gaps = 3/365 (0%)

Query: 3   EYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQV 62
           ++ TLR+IWW L+G LLIGF +TDGFDMGVGALLP + +++ ++R++IN++   W+GNQV
Sbjct: 6   DFATLRVIWWALVGILLIGFALTDGFDMGVGALLPFVAKTDEERRMVINTVGATWEGNQV 65

Query: 63  WLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDIS 122
           W I  GGA+FAAWP VYA SFS  Y+AM+++L A+ LRP+  +YR+K   P WR   D +
Sbjct: 66  WFILGGGAIFAAWPFVYAISFSGFYLAMFVVLTAMILRPVGFKYRSKRQDPRWRAFWDWA 125

Query: 123 ISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALV 182
           + + G +P L FGVA GN++QG PF L++ L   Y GSF+ L +PF++L G + V M ++
Sbjct: 126 LFVGGFVPVLCFGVALGNVLQGAPFRLDSDLRAFYDGSFLGLFSPFALLCGLLSVSMLVL 185

Query: 183 QGSAWLTLKTSD-ILHKKARLTAQISVLCLFGLFIIGGFMV-HGMNGYLIVSSLDYNAIS 240
            G+AW+T+K  +  + ++AR   +++ L    LF  GGF V  G  G+ I    D    S
Sbjct: 186 HGAAWITVKGEEGPVAERARRIGELAGLASIVLFAAGGFWVAFGGMGFRIEGLADAAGPS 245

Query: 241 NPL-NKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNA 299
           NPL      ++ GAWL N+ R+ WM  AP+ G   A    L  + K+  + F  +S +  
Sbjct: 246 NPLRGAAAVREPGAWLDNYGRHGWMILAPVLGFAGAALALLGLRAKSAWMAFTGSSASAV 305

Query: 300 CIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYR 359
            II T G +MFPFI+PSS +P  SLT+W+A+SS  TL IM  V  V LP++L YTA+ Y+
Sbjct: 306 GIIATVGLSMFPFILPSSVDPRSSLTVWNASSSHLTLFIMLVVTIVFLPLVLAYTAWVYK 365

Query: 360 TMFGR 364
            ++GR
Sbjct: 366 VLWGR 370