Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein from Paraburkholderia bryophila 376MFSha3.1

 Score =  139 bits (351), Expect = 9e-38
 Identities = 108/363 (29%), Positives = 184/363 (50%), Gaps = 44/363 (12%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L ++W  +IG  +  +++ DGFD+G+G L P   + ++D+ VM+N++AP WDGN+ +L+ 
Sbjct: 5   LPVVWAFIIGLGVFIYVMLDGFDLGIGLLFPFF-EEKADRHVMLNTVAPVWDGNETFLVL 63

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
            G  L+ A+P+VY+T   + Y+ + L+++ L  R  A E RAK      +   D++    
Sbjct: 64  GGAGLYGAFPVVYSTLLPANYMPLILMVVGLIFRGAAFELRAK--AKRTQHAWDLAFIGG 121

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALVQ-GS 185
             +  L  G+  G+L+QG+      ++   + G   D ++PFS+   GIGVLM     G 
Sbjct: 122 SALAALCQGITLGSLLQGI-----KIVDSRFVGDPFDWLSPFSLFC-GIGVLMTYATLGC 175

Query: 186 AWLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPLNK 245
            WL LKT   L +K R   +  V+ L  L  IG           IVS   +  I  P  +
Sbjct: 176 GWLILKTDGELQRKMRELMRPLVIAL--LATIG-----------IVSL--WTVIGLPAVE 220

Query: 246 VVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNACIILTA 305
             +  +G       +  W    P+  ++   G+  S + +++A+ F+       C +   
Sbjct: 221 KRWFGSG-------QLGWFLPVPILVVLCVWGILRSVRLQHEAMPFLLTLA--ICFLGYT 271

Query: 306 G--FAMFPFIMPSSFEPSHSLTLWDATSSERT-LNIMTGVAFVMLPIILFYTAFSYRTMF 362
           G   +++P+I+P       SLT+WDA+SS  + L  + G A ++LP+IL Y A  YR   
Sbjct: 272 GLVISIWPYIIPP------SLTIWDASSSHSSQLFALVGTA-IVLPVILVYNAMQYRVFR 324

Query: 363 GRL 365
           G++
Sbjct: 325 GKV 327