Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (RefSeq) from Shewanella sp. ANA-3

 Score =  421 bits (1082), Expect = e-122
 Identities = 195/379 (51%), Positives = 274/379 (72%), Gaps = 1/379 (0%)

Query: 1   MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60
           MF+Y+ LR+IWW LIG L IGF +TDGFDMGVGALLPI+G+ ++++R+M+N+IAPHWDGN
Sbjct: 1   MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMVNTIAPHWDGN 60

Query: 61  QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120
           QVWLITAGGALFAAWP+VYA SFS  Y+AM L+L AL+ RP+  +YR+KI+ P WRK  D
Sbjct: 61  QVWLITAGGALFAAWPMVYAVSFSGFYVAMMLVLFALYTRPVGFDYRSKIENPKWRKSWD 120

Query: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180
            ++   G IPPL+ GVAFGNL+QG+PF+ +  L   YHG    L+ PF +L+G + V M 
Sbjct: 121 WALFCGGFIPPLIIGVAFGNLLQGVPFNFDEFLRATYHGGLFGLLNPFGLLAGLVSVSMF 180

Query: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGG-FMVHGMNGYLIVSSLDYNAI 239
           ++QG+AWL +KT   L  +A    Q+  L +  LF   G ++ +G++GY+I S+LD++A+
Sbjct: 181 MMQGAAWLQMKTDGELRVRAANATQLCALLVAVLFAAAGVWLANGIDGYVITSTLDHHAL 240

Query: 240 SNPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNA 299
           SNP  K V  ++GAWL N+++YP     P+ G+ + + V L ++       F+ +S+T A
Sbjct: 241 SNPTLKTVAVESGAWLANYDKYPITMLFPVLGVALPLLVILVSRLNRSGFAFLFSSLTVA 300

Query: 300 CIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYR 359
            +ILT G AMFPF+MPSS +P+ SLT+WDAT+SE TL +MT  A + +PI+L YT ++Y 
Sbjct: 301 MVILTCGAAMFPFVMPSSLDPNVSLTMWDATASEMTLTVMTWAAIIFVPIVLSYTVWTYF 360

Query: 360 TMFGRLDKQYIERNHHSLY 378
            MFGRL++++IE N  SLY
Sbjct: 361 KMFGRLNRKHIEDNKASLY 379