Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., cytochrome d ubiquinol oxidase, subunit II (RefSeq) from Shewanella sp. ANA-3

 Score =  140 bits (353), Expect = 5e-38
 Identities = 110/370 (29%), Positives = 179/370 (48%), Gaps = 46/370 (12%)

Query: 3   EYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQV 62
           E+D L LIW+G+I    + +++ DGFD+G+G L P +   E D+ VM+N++AP WDGN+ 
Sbjct: 2   EFD-LPLIWFGIIIFATLMYIVMDGFDLGIGILFPFI-HDEDDRDVMVNTVAPVWDGNET 59

Query: 63  WLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDIS 122
           WL+  G +L  A+PL YA    +L I + ++LLAL  R +A E+R K  +   +   D +
Sbjct: 60  WLVLGGASLLGAFPLAYAIVLEALTIPLLIMLLALIFRGVAFEFRFK-SSAETKPFWDKA 118

Query: 123 ISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALV 182
                +I     GV  G  + G+           + GS  D ++PFS+  G   +L   +
Sbjct: 119 FMFGSIIATFAQGVVLGAFISGISVDGQR-----FSGSSFDWLSPFSLFCGFGLMLAYAL 173

Query: 183 QGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNP 242
            G+ WL  K +  L    +  A++  +CL  L  IG           IVS      +  P
Sbjct: 174 LGATWLVKKCTGTLKTTMQQLAKVLAVCL--LMTIG-----------IVS------LWTP 214

Query: 243 LNKVVFQQAGAWLTNFERYPWMWFAPMGGLMM--AMGVFLSAKWKNDAITFVCASVTNAC 300
                F Q    L  F      +FAP+  L++     +  +   ++D   F+   +T A 
Sbjct: 215 -----FVQPNIALRWFSLPNLFYFAPVPLLVLLCTKALIRALNTEDDYRPFL---LTLAL 266

Query: 301 IIL---TAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFS 357
           I L     G +++P I+P       +++LW A + E +L  M   A +++P+IL YT +S
Sbjct: 267 IFLGFSGLGISIWPHIIPP------TISLWQAAAPESSLGFMLIGALMIIPLILAYTFWS 320

Query: 358 YRTMFGRLDK 367
           Y    G++ K
Sbjct: 321 YYVFRGKVTK 330