Pairwise Alignments

Query, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., putative Cytochrome bd2, subunit I from Pseudomonas fluorescens FW300-N2E2

 Score =  235 bits (599), Expect = 3e-66
 Identities = 123/317 (38%), Positives = 180/317 (56%), Gaps = 7/317 (2%)

Query: 4   FMIDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLF 63
           F ++ ++L+R+QFA T  FH LF  +TIG++  LA++E +++ T    Y+D+  FW K+F
Sbjct: 2   FGLEALDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTRDDTYRDLYHFWSKIF 61

Query: 64  GINFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWS 123
            +NF +GV +GL M +QFGTNWS +S + G + G  L  E L AFFLE+ F+G+  FGW+
Sbjct: 62  AVNFGMGVVSGLVMAYQFGTNWSRFSDFAGAVTGPLLTYEVLTAFFLEAGFLGVMLFGWN 121

Query: 124 RLSKRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEFNYQTMRMEMTSFAEVVLNPV 183
           R+ +  H   T +VA+G+  S  WIL +N WMQ P G E      R+    +  VV NP 
Sbjct: 122 RVGRGLHFFSTVMVAIGTLISTFWILSSNSWMQTPQGYEI--IDGRVIPVDWLAVVFNPS 179

Query: 184 AQVKFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVIVLGD 243
              + LH   +A+   A F+   ++++LL+GRD    RR  ++A    +       V+GD
Sbjct: 180 FPYRLLHMSTAAFVATAFFVGSSAAWHLLRGRDTPAIRRMLSMAMWMALLVAPIQAVIGD 239

Query: 244 ESGYKLGDVQKVKLAAIEAEWH---TEPAPAAFTLFGLPNQKEGKTDYAIKIPYLMGLIA 300
             G      Q  K+AAIE  W     EP P    LFG P+ +  KT +A++IPYL  LI 
Sbjct: 240 FHGLNTLKHQPAKIAAIEGHWENVGNEPTP--LILFGWPDMQAEKTKFAVEIPYLGSLIL 297

Query: 301 TRSFDEQVTGLHDLRHE 317
           T S D+QV  L +   E
Sbjct: 298 THSLDKQVPALKEFPPE 314



 Score = 76.6 bits (187), Expect = 2e-18
 Identities = 42/141 (29%), Positives = 66/141 (46%)

Query: 370 DANEAQIQQAADDSMPTVWPLFWSFRIMVGCGFIMLFVFGAALLQTCRQRITHKPWVLKA 429
           D     +++   +  P    +FWSFR+MVG G +M+F    +L      RI      L  
Sbjct: 302 DKQVPALKEFPPEDRPNSTIVFWSFRVMVGLGLLMIFTGLCSLWLRRNDRIYQSRPFLYM 361

Query: 430 ALWSIPLPWIAIEAGWFVAEYGRQPWAIGEVLPVTVAVSSQTFENLITSLAIILSLYTVF 489
            LW  P   +AI AGWF  E GRQPW +  ++    A S  +F  +  +L + + +Y   
Sbjct: 362 VLWMGPSGLVAILAGWFTTEIGRQPWVVYGLMRTADASSGHSFTQMSITLVLFVVVYFAL 421

Query: 490 IFVESYLIVTVARKGPSSLKT 510
                  ++ + RKGP + +T
Sbjct: 422 FGAGLSYMMRLVRKGPEAHET 442