Pairwise Alignments

Query, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., Cytochrome bd-type quinol oxidase, subunit 1 from Pseudomonas stutzeri RCH2

 Score =  233 bits (593), Expect = 2e-65
 Identities = 114/315 (36%), Positives = 183/315 (58%), Gaps = 3/315 (0%)

Query: 4   FMIDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLF 63
           F ++ +EL+R+QFA T  FH +F  +TIG++  LA++E++++ T +++Y+D+  FW K+F
Sbjct: 2   FGLEALELARIQFAFTITFHIIFPAITIGLASFLAVLEALWLKTRQEVYRDLYHFWLKIF 61

Query: 64  GINFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWS 123
            +NF +GV +G+ M +QFGTNWS YS + G + G  L  E L AFFLE+ F+G+  FGW+
Sbjct: 62  AVNFGMGVVSGIVMAYQFGTNWSAYSEFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWN 121

Query: 124 RLSKRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEFNYQTMRMEMTSFAEVVLNPV 183
           R+ +R H   T +VA+G+  S  WIL +N WM  P G E     + + +  FA ++ NP 
Sbjct: 122 RVGERLHFFSTLMVAIGTLISTFWILASNSWMHTPQGHEI-IDGIVVPVDWFA-IIFNPS 179

Query: 184 AQVKFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVIVLGD 243
              +  H   +A+   A F+   ++++LL+G+D    R+  ++A    +       V+GD
Sbjct: 180 FPYRLAHMAVAAFLATAFFVGASAAWHLLRGKDTPAIRKMLSMAMWMALLVAPVQAVIGD 239

Query: 244 ESGYKLGDVQKVKLAAIEAEW-HTEPAPAAFTLFGLPNQKEGKTDYAIKIPYLMGLIATR 302
             G    + Q  K+AA+E  W ++E  P    LFG P+ +  +T Y I+IPYL  +I   
Sbjct: 240 FHGLNTLEYQPAKIAAMEGHWDNSEGGPTPLLLFGWPDMEAEETRYKIEIPYLASIILKH 299

Query: 303 SFDEQVTGLHDLRHE 317
           S  E +  L D   E
Sbjct: 300 SLTEPIPALKDFPPE 314



 Score = 64.7 bits (156), Expect = 7e-15
 Identities = 40/124 (32%), Positives = 60/124 (48%)

Query: 382 DSMPTVWPLFWSFRIMVGCGFIMLFVFGAALLQTCRQRITHKPWVLKAALWSIPLPWIAI 441
           +  P    +FW+FRIMV  G +M+     +LL     R+      L+  L   P   IAI
Sbjct: 314 EDRPNSTIVFWTFRIMVALGLLMIVTGIWSLLLRRGDRLYSSRPFLRLVLLMGPSGLIAI 373

Query: 442 EAGWFVAEYGRQPWAIGEVLPVTVAVSSQTFENLITSLAIILSLYTVFIFVESYLIVTVA 501
            AGW+  E GRQPW I  ++    AVS+     L  +LA+ + +Y     V    ++ + 
Sbjct: 374 LAGWYTTEIGRQPWVIYGLMRTADAVSNHGAGQLGLTLAMFVVVYFAVFGVGMVYVLRLV 433

Query: 502 RKGP 505
           +KGP
Sbjct: 434 KKGP 437