Pairwise Alignments

Query, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., cytochrome oxidase d subunit I from Synechococcus elongatus PCC 7942

 Score =  221 bits (563), Expect = 5e-62
 Identities = 115/299 (38%), Positives = 174/299 (58%), Gaps = 4/299 (1%)

Query: 3   AFMIDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKL 62
           +++ D   LSRLQFA+TA+FH L+  LT G++  L I+E +++ T    Y    RFW KL
Sbjct: 11  SWLADTATLSRLQFAVTAIFHMLWPVLTTGLAIFLVIVEGMWLRTRNPDYYHHARFWSKL 70

Query: 63  FGINFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGW 122
           + +NF +GV +GL MEFQFGTNW+ +S  VGD FG+ L  E  +AF LE+ F+G+  FGW
Sbjct: 71  YVLNFGIGVASGLPMEFQFGTNWAPFSEAVGDFFGSILGFEGAMAFMLEAGFLGIMLFGW 130

Query: 123 SRLSKRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEFNYQTMRMEMTSFAEVVLNP 182
           +R+    H L T +VA G++ S  WIL AN WMQ P G     Q    ++  +  ++ NP
Sbjct: 131 NRVPPPIHYLATIMVAFGANLSTFWILAANSWMQTPAGTLL--QDGHFQVLDYFRIIFNP 188

Query: 183 VAQVKFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVIVLG 242
              V   H   +        + G+S++YLL+ R+ EF RRSF I  +  +A     I +G
Sbjct: 189 FMVVSVSHMFLATLETSLFMVGGISAWYLLRDREAEFFRRSFVIVLSALIAIAPLQIWVG 248

Query: 243 DESGYKLGDVQKVKLAAIEAEWHTEPA--PAAFTLFGLPNQKEGKTDYAIKIPYLMGLI 299
             SG ++ + Q  KLAA+EA+W T PA   A +++   P+ +     +++++P  +G I
Sbjct: 249 HLSGEQVWEYQPTKLAAMEAQWKTIPAGETAPWSVLAWPDTQAETNRWSLEVPQALGWI 307



 Score = 68.9 bits (167), Expect = 4e-16
 Identities = 39/116 (33%), Positives = 59/116 (50%)

Query: 390 LFWSFRIMVGCGFIMLFVFGAALLQTCRQRITHKPWVLKAALWSIPLPWIAIEAGWFVAE 449
           +F++FR+MVG GF +  +     LQ  R R+T   W+L   + + PL +IA+E+GW V  
Sbjct: 336 VFYAFRVMVGIGFALAGLMLLTGLQWLRGRLTRDRWLLWGWVLAAPLGYIAVESGWIVRC 395

Query: 450 YGRQPWAIGEVLPVTVAVSSQTFENLITSLAIILSLYTVFIFVESYLIVTVARKGP 505
            GRQPW +   L    + S      + +SL   L LY+V      +    +  KGP
Sbjct: 396 VGRQPWLVYGQLRTLDSASDVPAGAVASSLGTFLLLYSVLFVTALFFGRRILLKGP 451